Detailed information NTG0559798

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KDB76_RS03610
• Genome accession: NZ_CP073661
• Coordinates: 795679..796545 (-)
• Length: 288 a.a.
• NCBI ID: WP_038408633.1
• Uniprot ID: -
• Organism: Pseudomonas sp. JS425
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 790679..801545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KDB76_RS03575 (KDB76_03575)	-	791126..792421 (-)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-
KDB76_RS03580 (KDB76_03580)	-	792506..792679 (-)	174	WP_013970765.1	DUF3094 family protein	-
KDB76_RS03585 (KDB76_03585)	-	792813..793442 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
KDB76_RS03590 (KDB76_03590)	-	793498..793929 (-)	432	WP_015268860.1	hypothetical protein	-
KDB76_RS03595 (KDB76_03595)	-	794016..794723 (+)	708	WP_038408631.1	energy-coupling factor ABC transporter permease	-
KDB76_RS03600 (KDB76_03600)	yacG	794859..795059 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
KDB76_RS03605 (KDB76_03605)	coaE	795056..795679 (-)	624	WP_013970769.1	dephospho-CoA kinase	-
KDB76_RS03610 (KDB76_03610)	pilD	795679..796545 (-)	867	WP_038408633.1	A24 family peptidase	Machinery gene
KDB76_RS03615 (KDB76_03615)	-	796548..797756 (-)	1209	WP_023660629.1	type II secretion system F family protein	-
KDB76_RS03620 (KDB76_03620)	-	797972..798382 (+)	411	WP_038408635.1	pilin	-
KDB76_RS03630 (KDB76_03630)	-	798652..799266 (-)	615	WP_038408637.1	recombinase family protein	-
KDB76_RS03635 (KDB76_03635)	-	799531..799926 (+)	396	WP_080708126.1	lysozyme inhibitor LprI family protein	-
KDB76_RS03640 (KDB76_03640)	-	799973..800332 (+)	360	WP_144241742.1	hypothetical protein	-
KDB76_RS03645 (KDB76_03645)	-	800329..800853 (+)	525	WP_038408639.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32031.21 Da
• Isoelectric Point: 7.9596

>NTDB_id=559798 KDB76_RS03610 WP_038408633.1 795679..796545(-) (pilD) [Pseudomonas sp. JS425]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=559798 KDB76_RS03610 WP_038408633.1 795679..796545(-) (pilD) [Pseudomonas sp. JS425]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCTTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAGT
TGCCAATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGTGCGCATCGGATTCGCGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAAGACCCGCATCAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTAG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTTGGCCTCTACGTCCCGCTGACCAGTGCGTTGTGGGGCGCGGTGGC
TGGGTACCTCAGCCTTTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCCATGGGCACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.909	95.486	0.524
pilD	Acinetobacter baumannii D1279779	52.5	97.222	0.51
pilD	Acinetobacter nosocomialis M2	51.786	97.222	0.503
pilD	Vibrio campbellii strain DS40M4	50.534	97.569	0.493
pilD	Neisseria gonorrhoeae MS11	51.698	92.014	0.476