Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KEC47_RS14415 Genome accession   NZ_CP073656
Coordinates   2993149..2993793 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain Y816     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2988149..2998793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC47_RS14380 (KEC47_14380) - 2989334..2989765 (+) 432 WP_077722765.1 Na(+)/H(+) antiporter subunit B -
  KEC47_RS14385 (KEC47_14385) - 2989765..2990106 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  KEC47_RS14390 (KEC47_14390) - 2990099..2991580 (+) 1482 WP_077722766.1 Na+/H+ antiporter subunit D -
  KEC47_RS14395 (KEC47_14395) - 2991586..2992062 (+) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  KEC47_RS14400 (KEC47_14400) - 2992062..2992346 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  KEC47_RS14405 (KEC47_14405) mnhG 2992330..2992704 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  KEC47_RS14410 (KEC47_14410) - 2992744..2993127 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  KEC47_RS14415 (KEC47_14415) comA 2993149..2993793 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  KEC47_RS14420 (KEC47_14420) comP 2993874..2996180 (-) 2307 WP_165409405.1 sensor histidine kinase Regulator
  KEC47_RS14425 (KEC47_14425) comX 2996199..2996375 (-) 177 WP_044052947.1 competence pheromone ComX -
  KEC47_RS14430 (KEC47_14430) - 2996390..2997265 (-) 876 WP_146277410.1 polyprenyl synthetase family protein -
  KEC47_RS14435 (KEC47_14435) degQ 2997417..2997557 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  KEC47_RS14440 (KEC47_14440) - 2998022..2998363 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=559754 KEC47_RS14415 WP_003152052.1 2993149..2993793(-) (comA) [Bacillus velezensis strain Y816]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=559754 KEC47_RS14415 WP_003152052.1 2993149..2993793(-) (comA) [Bacillus velezensis strain Y816]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGTACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864