Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SCSC_RS06600 Genome accession   NZ_AP014647
Coordinates   1361243..1361839 (-) Length   198 a.a.
NCBI ID   WP_003068251.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1356243..1366839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS06575 (SCSC_1350) - 1356492..1357177 (-) 686 Protein_1285 YwaF family protein -
  SCSC_RS06580 (SCSC_1351) - 1357184..1357888 (-) 705 WP_006269761.1 TIGR02206 family membrane protein -
  SCSC_RS06585 (SCSC_1352) - 1357895..1358443 (-) 549 WP_080572552.1 DUF1697 domain-containing protein -
  SCSC_RS06590 (SCSC_1353) murF 1358433..1359803 (-) 1371 WP_006269741.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SCSC_RS06595 (SCSC_1354) - 1360066..1361112 (-) 1047 WP_037565728.1 D-alanine--D-alanine ligase -
  SCSC_RS06600 (SCSC_1355) recR 1361243..1361839 (-) 597 WP_003068251.1 recombination mediator RecR Machinery gene
  SCSC_RS06605 (SCSC_1356) pbp2b 1361850..1363916 (-) 2067 WP_172459567.1 penicillin-binding protein PBP2B -
  SCSC_RS06610 (SCSC_1357) - 1364073..1364765 (-) 693 WP_003036126.1 phosphoglycerate mutase -
  SCSC_RS06615 (SCSC_1358) - 1364903..1365364 (-) 462 WP_003035860.1 Fur family transcriptional regulator -
  SCSC_RS06620 (SCSC_1359) - 1365533..1365808 (-) 276 WP_003036014.1 HU family DNA-binding protein -
  SCSC_RS06625 (SCSC_1360) - 1365937..1366770 (-) 834 WP_006269763.1 DegV family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21591.63 Da        Isoelectric Point: 4.3080

>NTDB_id=55975 SCSC_RS06600 WP_003068251.1 1361243..1361839(-) (recR) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MLYPTPIAKLIESFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELTYCSICGNLTDDDPCAICTDETRDQS
TILVVEDSRDVSAMENIQEYHGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVAEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=55975 SCSC_RS06600 WP_003068251.1 1361243..1361839(-) (recR) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGCTTTATCCAACACCGATTGCGAAATTAATTGAAAGTTTTTCAAAATTACCAGGAATTGGCATAAAAACAGCAACACG
CTTGGCTTTTTATACGATTGGCATGAGTGATGATGATGTCAATGAATTTGCTAAAAATTTACTTGCAGCCAAACGTGAGC
TAACCTATTGCTCTATTTGTGGCAATTTAACGGATGATGATCCTTGTGCTATCTGTACCGATGAGACCCGTGATCAATCT
ACTATTTTGGTTGTAGAAGATAGTCGAGATGTATCTGCTATGGAAAATATCCAAGAATACCATGGTTTATACCATGTTTT
GCAAGGATTGATTTCTCCTATGAATGGTGTCGGACCTGATGACATCAATCTGAAAAGTTTGATTACACGGTTAATGGATA
GTGAGGTGGCTGAAGTGATTGTAGCGACCAATGCTACAGCAGATGGAGAAGCAACTTCCATGTATATCTCGCGGGTGTTA
AAGCCAGCTGGTATCAAAGTGACGCGACTAGCCCGTGGATTAGCAGTTGGATCTGATATTGAATATGCAGATGAAGTGAC
TTTGCTTCGAGCTATTGAGAATCGTACGGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

90.909

100

0.909
  recR Bacillus subtilis subsp. subtilis str. 168

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment