Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   KEM15_RS01570 Genome accession   NZ_CP073632
Coordinates   302541..303833 (+) Length   430 a.a.
NCBI ID   WP_274504534.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297541..308833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS01545 (KEM15_01525) - 298194..298835 (+) 642 WP_274504532.1 response regulator transcription factor -
  KEM15_RS01550 (KEM15_01530) - 298887..300287 (+) 1401 WP_171989465.1 Cof-type HAD-IIB family hydrolase -
  KEM15_RS01555 (KEM15_01535) - 300289..300666 (+) 378 WP_217374633.1 S1 RNA-binding domain-containing protein -
  KEM15_RS01560 (KEM15_01540) cysK 300820..301746 (-) 927 WP_217374634.1 cysteine synthase A -
  KEM15_RS01565 (KEM15_01545) - 301852..302484 (-) 633 WP_274504533.1 YigZ family protein -
  KEM15_RS01570 (KEM15_01550) comFA/cflA 302541..303833 (+) 1293 WP_274504534.1 DEAD/DEAH box helicase Machinery gene
  KEM15_RS01575 (KEM15_01555) - 303826..304491 (+) 666 WP_274504535.1 ComF family protein -
  KEM15_RS01580 (KEM15_01560) raiA 304568..305107 (+) 540 WP_217374638.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 430 a.a.        Molecular weight: 48591.13 Da        Isoelectric Point: 8.9842

>NTDB_id=559501 KEM15_RS01570 WP_274504534.1 302541..303833(+) (comFA/cflA) [Streptococcus parasuis strain NN1]
MNELENYHGRLFTKYQLTSEERKKAKTISSVVGKNSCFRCGTSFEEENKLPNAAYYCRACLLLGRVRTDEKLYYFPQKDF
SMNACLLWKGALTDWQQRISDGLVANVEKRQATLVHAVTGAGKTEMMYHAVASLINKGGAVCLASPRIDVCIELYKRLQN
DFSVPISLLHGKSDPYFRTPLVVATTHQLLKFYQAFDLVLIDEVDAFPYADNPILYRAADNAVKVDGVLVFLTATSTDEL
DKKVKSGKLQKLSLPRRFHGNPLVVPQKVWFSKFDTYLKKNKLVPKLRNAIQKQRETGYPLLIFVPEISKGLEFATIMEQ
IFPEETIGFVSSQTDNRLEIVEGFRNKEITILISTTILERGVTFPGVDVIVVQADHYLYTSSSLVQISGRVGRSMDRPTG
LLLFFYEGSTQSIEKAIAEIKQMNKEAGYV

Nucleotide


Download         Length: 1293 bp        

>NTDB_id=559501 KEM15_RS01570 WP_274504534.1 302541..303833(+) (comFA/cflA) [Streptococcus parasuis strain NN1]
ATGAATGAACTAGAGAATTACCATGGAAGACTTTTTACTAAATACCAATTAACGTCAGAAGAAAGAAAAAAAGCAAAAAC
AATTTCCAGTGTAGTAGGAAAGAATTCTTGTTTCCGATGCGGTACATCGTTTGAGGAAGAAAACAAGCTGCCAAATGCTG
CGTATTATTGTCGGGCTTGTCTCCTTTTGGGGAGAGTTCGAACAGATGAGAAACTCTACTATTTTCCACAGAAAGATTTT
TCAATGAATGCTTGTCTTCTATGGAAGGGGGCGCTGACCGATTGGCAACAACGAATATCAGATGGACTAGTTGCGAATGT
GGAAAAACGACAAGCAACTCTTGTTCATGCTGTAACAGGTGCGGGCAAAACGGAAATGATGTACCATGCTGTTGCATCAC
TAATTAATAAAGGAGGTGCTGTATGTCTAGCCAGTCCAAGAATTGATGTTTGTATTGAACTCTACAAGCGACTACAAAAT
GATTTTTCGGTCCCAATTAGTCTGCTACATGGGAAATCAGACCCATATTTCAGAACGCCACTCGTTGTTGCGACCACTCA
TCAGTTGTTAAAGTTCTATCAGGCATTTGATTTGGTCTTAATCGATGAAGTAGATGCTTTCCCCTATGCAGACAACCCAA
TATTATATCGAGCAGCAGATAATGCAGTTAAAGTAGACGGTGTTTTAGTATTTTTAACAGCAACCTCTACGGATGAATTA
GATAAAAAAGTCAAATCAGGTAAATTGCAAAAACTCAGTCTCCCTAGACGTTTTCATGGAAACCCGCTTGTGGTTCCGCA
AAAGGTCTGGTTTTCCAAATTCGATACATATTTGAAGAAAAATAAATTAGTTCCAAAACTCAGAAACGCCATTCAAAAGC
AAAGAGAAACAGGCTATCCATTACTTATTTTTGTACCAGAAATTTCGAAAGGATTGGAATTTGCAACCATAATGGAACAA
ATCTTTCCAGAAGAAACAATTGGTTTTGTATCGAGTCAGACAGACAATCGGCTTGAAATAGTGGAAGGATTTCGAAACAA
AGAAATTACAATTTTAATTTCTACTACAATCTTAGAGCGTGGTGTAACATTCCCAGGAGTAGATGTCATTGTTGTTCAAG
CCGATCACTACTTATACACGTCATCGAGTCTCGTGCAAATTTCAGGTCGGGTCGGAAGAAGTATGGACCGTCCGACGGGC
TTACTTCTGTTTTTTTATGAAGGAAGTACGCAGTCAATTGAAAAGGCAATTGCAGAAATCAAACAAATGAATAAGGAGGC
GGGTTATGTCTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(92-165)

Helicase conserved C-terminal domain (Helicase_C)

(288-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

64.554

99.07

0.64
  comFA/cflA Streptococcus pneumoniae D39

64.554

99.07

0.64
  comFA/cflA Streptococcus pneumoniae R6

64.554

99.07

0.64
  comFA/cflA Streptococcus mitis NCTC 12261

64.554

99.07

0.64
  comFA/cflA Streptococcus pneumoniae TIGR4

64.554

99.07

0.64
  comFA/cflA Streptococcus mitis SK321

64.319

99.07

0.637
  comFA Lactococcus lactis subsp. cremoris KW2

50.735

94.884

0.481
  comFA Latilactobacillus sakei subsp. sakei 23K

37.063

99.767

0.37