Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HD73_RS21345 Genome accession   NC_020238
Coordinates   4150456..4150890 (-) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus thuringiensis serovar kurstaki str. HD73     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4145456..4155890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HD73_RS21325 (HD73_4286) - 4146634..4147191 (+) 558 WP_000062063.1 PadR family transcriptional regulator -
  HD73_RS21335 (HD73_4287) metE 4147703..4149991 (+) 2289 WP_001007605.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  HD73_RS21340 (HD73_4288) comJ 4150030..4150419 (-) 390 WP_000424030.1 competence protein ComJ -
  HD73_RS21345 (HD73_4289) nucA/comI 4150456..4150890 (-) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  HD73_RS21350 (HD73_4290) - 4151117..4151866 (+) 750 WP_000388472.1 DUF3967 domain-containing protein -
  HD73_RS21355 (HD73_4291) kinB 4151905..4153179 (-) 1275 WP_000420369.1 sporulation sensor histidine kinase KinB -
  HD73_RS21360 (HD73_4293) - 4153490..4153690 (+) 201 WP_000929277.1 hypothetical protein -
  HD73_RS21365 (HD73_4294) - 4153813..4154976 (+) 1164 WP_000434578.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=55949 HD73_RS21345 WP_000811494.1 4150456..4150890(-) (nucA/comI) [Bacillus thuringiensis serovar kurstaki str. HD73]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=55949 HD73_RS21345 WP_000811494.1 4150456..4150890(-) (nucA/comI) [Bacillus thuringiensis serovar kurstaki str. HD73]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCATATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGTGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATACC
CAGATGGTACGCGAGTAAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549

Multiple sequence alignment