Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   KDD30_RS13410 Genome accession   NZ_CP073578
Coordinates   2896012..2896620 (+) Length   202 a.a.
NCBI ID   WP_211646293.1    Uniprot ID   -
Organism   Photobacterium sp. GJ3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2891012..2901620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDD30_RS13385 (KDD30_13385) - 2891256..2892025 (-) 770 Protein_2573 ABC transporter permease -
  KDD30_RS13390 (KDD30_13390) - 2892022..2892945 (-) 924 WP_211646289.1 ABC transporter ATP-binding protein -
  KDD30_RS13395 (KDD30_13395) can 2893112..2893768 (+) 657 WP_211646290.1 carbonate dehydratase -
  KDD30_RS13400 (KDD30_13400) - 2893885..2895216 (+) 1332 WP_211646291.1 IS4 family transposase -
  KDD30_RS13405 (KDD30_13405) hpt 2895270..2895803 (-) 534 WP_211646292.1 hypoxanthine phosphoribosyltransferase -
  KDD30_RS13410 (KDD30_13410) opaR 2896012..2896620 (+) 609 WP_211646293.1 TetR/AcrR family transcriptional regulator Regulator
  KDD30_RS13415 (KDD30_13415) - 2896639..2897676 (-) 1038 WP_211646294.1 ABC transporter ATP-binding protein -
  KDD30_RS13420 (KDD30_13420) - 2897676..2899304 (-) 1629 WP_211646295.1 iron ABC transporter permease -
  KDD30_RS13425 (KDD30_13425) - 2899458..2900471 (-) 1014 WP_211646296.1 Fe(3+) ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23139.52 Da        Isoelectric Point: 6.7444

>NTDB_id=559324 KDD30_RS13410 WP_211646293.1 2896012..2896620(+) (opaR) [Photobacterium sp. GJ3]
MDTIVKKTRTRLSPEKRKQQLLKCALEVFARRGIGRAGHADIADMANVSVATVFNYFPTREALVEQVLNQVERKFNELLN
LCLGEEHSSIHGHLSCMTGHLIDAVIDQQDWLKVWFEWSTSVRTETWPQFLDANRPNLKQVTNIFEQGKLDGQLSTEITS
YDLTWLLHGLCYVLYLRANIEPNKVSMQAQADAYISLMFPQA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=559324 KDD30_RS13410 WP_211646293.1 2896012..2896620(+) (opaR) [Photobacterium sp. GJ3]
ATGGACACCATAGTTAAAAAAACGAGGACACGTCTCTCACCCGAGAAACGCAAACAACAACTTCTCAAGTGTGCGCTGGA
AGTATTTGCCCGCCGGGGAATTGGTCGTGCCGGACATGCCGACATTGCTGATATGGCCAATGTCTCCGTGGCGACCGTCT
TCAATTACTTTCCAACCCGAGAAGCGCTTGTGGAGCAAGTTCTGAATCAGGTTGAACGCAAGTTCAATGAACTCTTGAAT
CTATGTCTGGGGGAAGAACACAGTAGCATTCACGGCCACCTGAGCTGTATGACCGGCCACTTAATTGACGCAGTGATTGA
CCAGCAGGACTGGCTGAAAGTCTGGTTTGAATGGAGTACCTCTGTTCGGACAGAAACCTGGCCGCAATTCCTGGATGCAA
ACCGCCCGAACCTGAAGCAAGTGACCAACATTTTTGAACAGGGCAAACTCGACGGCCAGCTGAGTACAGAGATCACCTCT
TACGATCTGACCTGGTTGCTGCACGGTTTGTGTTACGTGTTGTATCTGCGTGCCAACATTGAACCCAACAAGGTCAGTAT
GCAGGCTCAGGCCGACGCATACATCAGCCTGATGTTCCCGCAGGCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

48.5

99.01

0.48
  hapR Vibrio cholerae C6706

43.367

97.03

0.421
  hapR Vibrio cholerae strain A1552

43.367

97.03

0.421