Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | KAW33_RS12450 | Genome accession | NZ_CP073317 |
| Coordinates | 2664242..2664832 (+) | Length | 196 a.a. |
| NCBI ID | WP_005690377.1 | Uniprot ID | A0A508YN23 |
| Organism | Lacticaseibacillus rhamnosus strain CE1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2661864..2679175 | 2664242..2664832 | within | 0 |
Gene organization within MGE regions
Location: 2661864..2679175
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KAW33_RS12425 (KAW33_12425) | - | 2662200..2662427 (+) | 228 | WP_012807316.1 | hypothetical protein | - |
| KAW33_RS12430 (KAW33_12430) | - | 2662522..2663034 (+) | 513 | WP_012807317.1 | PedC/BrcD family bacteriocin maturation disulfide isomerase | - |
| KAW33_RS12435 (KAW33_12435) | - | 2663162..2663248 (-) | 87 | Protein_2410 | deoxyribose-phosphate aldolase | - |
| KAW33_RS12440 (KAW33_12440) | ssb | 2663358..2663789 (+) | 432 | WP_005690380.1 | single-stranded DNA-binding protein | - |
| KAW33_RS12445 (KAW33_12445) | rpsF | 2663916..2664212 (+) | 297 | WP_005685677.1 | 30S ribosomal protein S6 | - |
| KAW33_RS12450 (KAW33_12450) | ssb | 2664242..2664832 (+) | 591 | WP_005690377.1 | single-stranded DNA-binding protein | Machinery gene |
| KAW33_RS12455 (KAW33_12455) | rpsR | 2664924..2665160 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| KAW33_RS12460 (KAW33_12460) | - | 2665554..2666060 (-) | 507 | WP_005685670.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| KAW33_RS12465 (KAW33_12465) | - | 2666371..2667849 (+) | 1479 | WP_211751439.1 | cytochrome ubiquinol oxidase subunit I | - |
| KAW33_RS12470 (KAW33_12470) | cydB | 2667842..2668861 (+) | 1020 | WP_211751440.1 | cytochrome d ubiquinol oxidase subunit II | - |
| KAW33_RS12475 (KAW33_12475) | - | 2668901..2669095 (+) | 195 | WP_005707490.1 | hypothetical protein | - |
| KAW33_RS12480 (KAW33_12480) | - | 2669174..2669473 (-) | 300 | WP_249146480.1 | CAAX protease family protein | - |
| KAW33_RS12485 (KAW33_12485) | - | 2669584..2670600 (+) | 1017 | Protein_2420 | IS30 family transposase | - |
| KAW33_RS12490 (KAW33_12490) | - | 2671636..2672313 (+) | 678 | WP_211751441.1 | CPBP family intramembrane glutamic endopeptidase | - |
| KAW33_RS12495 (KAW33_12495) | - | 2672857..2674272 (-) | 1416 | WP_015764803.1 | IS5-like element ISLrh2 family transposase | - |
| KAW33_RS12500 (KAW33_12500) | - | 2674469..2675176 (+) | 708 | WP_249146481.1 | CPBP family intramembrane glutamic endopeptidase | - |
| KAW33_RS12505 (KAW33_12505) | - | 2675519..2675782 (+) | 264 | WP_014568883.1 | hypothetical protein | - |
| KAW33_RS12510 (KAW33_12510) | - | 2675923..2676447 (-) | 525 | WP_019728429.1 | ABC transporter permease | - |
| KAW33_RS12515 (KAW33_12515) | - | 2676634..2678052 (+) | 1419 | WP_003605947.1 | IS5-like element ISLrh3 family transposase | - |
| KAW33_RS12520 (KAW33_12520) | - | 2678267..2679175 (-) | 909 | WP_211751442.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 20905.63 Da Isoelectric Point: 4.9056
>NTDB_id=559057 KAW33_RS12450 WP_005690377.1 2664242..2664832(+) (ssb) [Lacticaseibacillus rhamnosus strain CE1]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
SPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
SPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 591 bp
>NTDB_id=559057 KAW33_RS12450 WP_005690377.1 2664242..2664832(+) (ssb) [Lacticaseibacillus rhamnosus strain CE1]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGAGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTTACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCAGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AGCCCGGCAGCAGGTCAGAACCAAGGTAACAATGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGAGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTTACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCAGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AGCCCGGCAGCAGGTCAGAACCAAGGTAACAATGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.735 |
100 |
0.617 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50 |
100 |
0.5 |