Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   - Genome accession   NZ_AUIN01000001
Coordinates   39208..39258 (+) Length   17 a.a.
NCBI ID   - Uniprot ID   -
Organism   Streptococcus devriesei DSM 19639     
Function   activate transcription of comX; activate transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 34208..44258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G573_RS0100175 - 34673..35071 (+) 399 WP_027974840.1 SRPBCC family protein -
  G573_RS0100180 - 35135..36181 (+) 1047 WP_027974841.1 hypothetical protein -
  G573_RS11480 - 36174..36326 (+) 153 WP_169364428.1 hypothetical protein -
  G573_RS0100190 purB 36492..37790 (+) 1299 WP_027974842.1 adenylosuccinate lyase -
  G573_RS0100195 comR 37916..38830 (+) 915 WP_027974843.1 helix-turn-helix domain-containing protein Regulator
  - comS 39208..39258 (+) 51 - - Regulator
  G573_RS0100205 ruvB 39490..40491 (+) 1002 WP_051175676.1 Holliday junction branch migration DNA helicase RuvB -
  G573_RS0100210 - 40520..40942 (+) 423 WP_027974845.1 low molecular weight protein-tyrosine-phosphatase -
  G573_RS0100215 - 41008..41388 (+) 381 WP_027974846.1 membrane protein -
  G573_RS0100220 - 41385..43169 (+) 1785 WP_027974847.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 17 a.a.        Molecular weight: 2006.44 Da        Isoelectric Point: 5.7900

>NTDB_id=559 39208..39258(+) (comS) [Streptococcus devriesei DSM 19639]
MATVFLTILRALDWWGI

Nucleotide


Download         Length: 51 bp        

>NTDB_id=559 39208..39258(+) (comS) [Streptococcus devriesei DSM 19639]
ATGGCTACAGTTTTTTTAACAATTTTAAGAGCCCTTGACTGGTGGGGAATC

XIP

This gene is known to encode the precursor of σX inducing peptide (XIP), which involves in competence development. The mature XIP sequence is displayed as below:

ALDWWGI


Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus mutans UA159

41.176

100

0.412

Multiple sequence alignment