Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   KCX77_RS15955 Genome accession   NZ_CP073265
Coordinates   3190549..3190692 (-) Length   47 a.a.
NCBI ID   WP_003327149.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3185549..3195692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS15930 (KCX77_15930) - 3185906..3186286 (-) 381 WP_199679676.1 hotdog fold thioesterase -
  KCX77_RS15935 (KCX77_15935) comA 3186304..3186945 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  KCX77_RS15940 (KCX77_15940) comP 3187026..3189320 (-) 2295 WP_212063790.1 histidine kinase Regulator
  KCX77_RS15945 (KCX77_15945) comX 3189328..3189489 (-) 162 WP_010789788.1 competence pheromone ComX -
  KCX77_RS15950 (KCX77_15950) - 3189505..3190365 (-) 861 WP_061669434.1 polyprenyl synthetase family protein -
  KCX77_RS15955 (KCX77_15955) degQ 3190549..3190692 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  KCX77_RS15960 (KCX77_15960) - 3191152..3191508 (+) 357 WP_010789790.1 hypothetical protein -
  KCX77_RS15965 (KCX77_15965) - 3191527..3192759 (-) 1233 WP_003327147.1 EAL and HDOD domain-containing protein -
  KCX77_RS15970 (KCX77_15970) - 3192897..3194363 (-) 1467 WP_010789792.1 nicotinate phosphoribosyltransferase -
  KCX77_RS15975 (KCX77_15975) - 3194379..3194930 (-) 552 WP_063637896.1 isochorismatase family cysteine hydrolase -
  KCX77_RS15980 (KCX77_15980) - 3195038..3195436 (-) 399 WP_003327144.1 YueI family protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5645.61 Da        Isoelectric Point: 8.5787

>NTDB_id=558659 KCX77_RS15955 WP_003327149.1 3190549..3190692(-) (degQ) [Bacillus atrophaeus strain CNY01]
MEKKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKFTYAMKIS

Nucleotide


Download         Length: 144 bp        

>NTDB_id=558659 KCX77_RS15955 WP_003327149.1 3190549..3190692(-) (degQ) [Bacillus atrophaeus strain CNY01]
GTGGAAAAGAAAAAACTTGAAGAAGTGAAACAATTATTATTCCGACTCGAACTTGATATCAAAGAAACGACAGATTCATT
ACGAAACATTAACAAAAGCATTGATCAGCTCGATAAATTCACATATGCAATGAAAATTTCGTGA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

95.455

93.617

0.894