Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KCX77_RS15935 Genome accession   NZ_CP073265
Coordinates   3186304..3186945 (-) Length   213 a.a.
NCBI ID   WP_003327154.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3181304..3191945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS15900 (KCX77_15900) - 3182497..3182928 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  KCX77_RS15905 (KCX77_15905) - 3182928..3183269 (+) 342 WP_212063788.1 Na(+)/H(+) antiporter subunit C -
  KCX77_RS15910 (KCX77_15910) - 3183262..3184743 (+) 1482 WP_212063789.1 Na+/H+ antiporter subunit D -
  KCX77_RS15915 (KCX77_15915) - 3184749..3185225 (+) 477 WP_003327158.1 Na+/H+ antiporter subunit E -
  KCX77_RS15920 (KCX77_15920) - 3185225..3185509 (+) 285 WP_010789784.1 Na(+)/H(+) antiporter subunit F1 -
  KCX77_RS15925 (KCX77_15925) mnhG 3185493..3185867 (+) 375 WP_003327156.1 monovalent cation/H(+) antiporter subunit G -
  KCX77_RS15930 (KCX77_15930) - 3185906..3186286 (-) 381 WP_199679676.1 hotdog fold thioesterase -
  KCX77_RS15935 (KCX77_15935) comA 3186304..3186945 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  KCX77_RS15940 (KCX77_15940) comP 3187026..3189320 (-) 2295 WP_212063790.1 histidine kinase Regulator
  KCX77_RS15945 (KCX77_15945) comX 3189328..3189489 (-) 162 WP_010789788.1 competence pheromone ComX -
  KCX77_RS15950 (KCX77_15950) - 3189505..3190365 (-) 861 WP_061669434.1 polyprenyl synthetase family protein -
  KCX77_RS15955 (KCX77_15955) degQ 3190549..3190692 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  KCX77_RS15960 (KCX77_15960) - 3191152..3191508 (+) 357 WP_010789790.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23944.30 Da        Isoelectric Point: 4.7742

>NTDB_id=558657 KCX77_RS15935 WP_003327154.1 3186304..3186945(-) (comA) [Bacillus atrophaeus strain CNY01]
MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=558657 KCX77_RS15935 WP_003327154.1 3186304..3186945(-) (comA) [Bacillus atrophaeus strain CNY01]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATTTTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATTCGTGCGGGGCTGCACGGCGCGATCAGCAAGACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATTTTAGTTGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCGCAAAATGATCAAGATGTTCTGACGCCAAGAGAATGCCTCATT
CTTCAAGAGGTGGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGCAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAACTGAACGTCGGTTCCCGGACGGAAGCGGTACTGATTGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.72

100

0.901