Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KCX77_RS01940 Genome accession   NZ_CP073265
Coordinates   380492..380929 (-) Length   145 a.a.
NCBI ID   WP_010787605.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 375492..385929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS01905 (KCX77_01905) - 376065..376520 (+) 456 WP_010787599.1 RDD family protein -
  KCX77_RS01910 (KCX77_01910) - 376605..376934 (+) 330 WP_010787600.1 YckD family protein -
  KCX77_RS01915 (KCX77_01915) - 377038..377463 (+) 426 WP_010787601.1 MarR family transcriptional regulator -
  KCX77_RS01920 (KCX77_01920) - 377451..377792 (+) 342 WP_106047525.1 DUF3147 family protein -
  KCX77_RS01925 (KCX77_01925) - 377813..378532 (+) 720 WP_003328073.1 AAA family ATPase -
  KCX77_RS01930 (KCX77_01930) - 378602..380038 (+) 1437 WP_212064163.1 family 1 glycosylhydrolase -
  KCX77_RS01935 (KCX77_01935) nin/comJ 380075..380473 (-) 399 WP_010787604.1 competence protein ComJ Regulator
  KCX77_RS01940 (KCX77_01940) nucA/comI 380492..380929 (-) 438 WP_010787605.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KCX77_RS01945 (KCX77_01945) - 381151..382854 (-) 1704 WP_010787606.1 methyl-accepting chemotaxis protein -
  KCX77_RS01950 (KCX77_01950) hxlB 382983..383540 (-) 558 WP_010787607.1 6-phospho-3-hexuloisomerase -
  KCX77_RS01955 (KCX77_01955) hxlA 383547..384179 (-) 633 WP_088116480.1 3-hexulose-6-phosphate synthase -
  KCX77_RS01960 (KCX77_01960) - 384397..384762 (+) 366 WP_106047522.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16004.78 Da        Isoelectric Point: 4.2040

>NTDB_id=558602 KCX77_RS01940 WP_010787605.1 380492..380929(-) (nucA/comI) [Bacillus atrophaeus strain CNY01]
MNLLKSLLLILVIIAAAIAGLVKGDFFSENQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEERR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=558602 KCX77_RS01940 WP_010787605.1 380492..380929(-) (nucA/comI) [Bacillus atrophaeus strain CNY01]
ATGAACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTT
CTCAGAAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATTGACAGGGACGGGGCTGAAGAACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAGTATATCGCCCCGTCGGACAATCGCGGGGCTGGCTCATGGGTCGGTCATCAGCTCACTGATT
ATCCAGATGGAACGAAAGTGTTATTTACCATTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

81.944

99.31

0.814