Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   KCV10_RS17560 Genome accession   NZ_CP073243
Coordinates   3743551..3743931 (-) Length   126 a.a.
NCBI ID   WP_004701982.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S63-3     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3738551..3748931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS17530 tadA 3738555..3739058 (-) 504 WP_212511471.1 tRNA adenosine(34) deaminase TadA -
  KCV10_RS17535 - 3739066..3740190 (-) 1125 WP_019458997.1 enoyl-CoA hydratase/isomerase family protein -
  KCV10_RS17540 ung 3740187..3740900 (-) 714 WP_004701973.1 uracil-DNA glycosylase -
  KCV10_RS17545 - 3740951..3741547 (-) 597 WP_134261626.1 6-pyruvoyl trahydropterin synthase family protein -
  KCV10_RS17550 gspK 3741777..3742736 (-) 960 WP_191013120.1 type II secretion system minor pseudopilin GspK -
  KCV10_RS17555 xcpW 3742736..3743551 (-) 816 WP_212511472.1 type II secretion system minor pseudopilin GspJ Machinery gene
  KCV10_RS17560 xcpV 3743551..3743931 (-) 381 WP_004701982.1 type II secretion system minor pseudopilin GspI Machinery gene
  KCV10_RS17565 - 3743921..3744472 (-) 552 WP_004701984.1 type II secretion system protein -
  KCV10_RS17570 - 3744482..3745090 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  KCV10_RS17575 - 3745128..3745901 (-) 774 WP_212511473.1 TatD family hydrolase -
  KCV10_RS17580 - 3745919..3746260 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  KCV10_RS17585 - 3746273..3747253 (-) 981 WP_212511474.1 DNA polymerase III subunit delta' -
  KCV10_RS17590 kdsB 3747265..3748026 (-) 762 WP_212511475.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13962.16 Da        Isoelectric Point: 9.4463

>NTDB_id=558463 KCV10_RS17560 WP_004701982.1 3743551..3743931(-) (xcpV) [Acinetobacter seifertii strain S63-3]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQV
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=558463 KCV10_RS17560 WP_004701982.1 3743551..3743931(-) (xcpV) [Acinetobacter seifertii strain S63-3]
ATGAAATCTAAAGGCTTTACCCTATTAGAGGTTATGGTTGCTTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTAGCAATGAATGAAATTG
CTATGATGGAGATTAACCAAGAGTGGTTGCAAGGCACTCAAAGTAAGCAGGTAACTTCTCAAGGTGAGACATGGCAGGTT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATCAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACGCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

95.238

100

0.952