NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	KCV10_RS17555	Genome accession	NZ_CP073243
Coordinates	3742736..3743551 (-)	Length	271 a.a.
NCBI ID	WP_212511472.1	Uniprot ID	-
Organism	Acinetobacter seifertii strain S63-3
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3737736..3748551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KCV10_RS17525	-	3738045..3738485 (-)	441	WP_212511470.1	SRPBCC family protein	-
KCV10_RS17530	tadA	3738555..3739058 (-)	504	WP_212511471.1	tRNA adenosine(34) deaminase TadA	-
KCV10_RS17535	-	3739066..3740190 (-)	1125	WP_019458997.1	enoyl-CoA hydratase/isomerase family protein	-
KCV10_RS17540	ung	3740187..3740900 (-)	714	WP_004701973.1	uracil-DNA glycosylase	-
KCV10_RS17545	-	3740951..3741547 (-)	597	WP_134261626.1	6-pyruvoyl trahydropterin synthase family protein	-
KCV10_RS17550	gspK	3741777..3742736 (-)	960	WP_191013120.1	type II secretion system minor pseudopilin GspK	-
KCV10_RS17555	xcpW	3742736..3743551 (-)	816	WP_212511472.1	type II secretion system minor pseudopilin GspJ	Machinery gene
KCV10_RS17560	xcpV	3743551..3743931 (-)	381	WP_004701982.1	type II secretion system minor pseudopilin GspI	Machinery gene
KCV10_RS17565	-	3743921..3744472 (-)	552	WP_004701984.1	type II secretion system protein	-
KCV10_RS17570	-	3744482..3745090 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
KCV10_RS17575	-	3745128..3745901 (-)	774	WP_212511473.1	TatD family hydrolase	-
KCV10_RS17580	-	3745919..3746260 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
KCV10_RS17585	-	3746273..3747253 (-)	981	WP_212511474.1	DNA polymerase III subunit delta'	-
KCV10_RS17590	kdsB	3747265..3748026 (-)	762	WP_212511475.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 271 a.a. Molecular weight: 30658.96 Da Isoelectric Point: 9.5711

                                >NTDB_id=558462 KCV10_RS17555 WP_212511472.1 3742736..3743551(-) (xcpW) [Acinetobacter seifertii strain S63-3]

MIKNKHFCIRSKVSHLAARSDVVTTDCSEHSSSSYAQTKRCFRDSHTRNTVSHLAARSSSARLARASGFTLVELLVAIAI

FAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLK

QGLSPFERIEYRYDADQKKLYRLKYTNLNTSNNEQPLSSTLLSQVDQYRVMVLTPQEVTKWPEVNIDPTKPNELKKLPKG

IKIQVTVAGVSYEWVYSLNQSNLALSQQGGS

Nucleotide

Download Length: 816 bp

                                >NTDB_id=558462 KCV10_RS17555 WP_212511472.1 3742736..3743551(-) (xcpW) [Acinetobacter seifertii strain S63-3]

ATGATAAAAAATAAGCACTTTTGCATCCGAAGCAAAGTTTCACATCTTGCAGCTAGATCAGACGTTGTAACGACTGACTG

CTCAGAGCATAGCTCTTCGTCTTACGCTCAGACAAAGCGCTGTTTTAGAGATTCTCACACTCGAAACACTGTTTCTCATC

TTGCGGCGCGATCGAGCAGTGCTCGATTAGCTCGCGCCTCGGGATTTACGTTGGTTGAGTTATTGGTTGCGATTGCTATT

TTCGCGGTTTTATCTTTATTGGGGTGGAAAATATTCGATTATTTGCTCAAGGTTCGTGATCGTAACGCCGAACATGAAGT

GCATTTATTTGAATTACAAGATGCTTATCAACAAATTCTTCGTGATACTTTACAAATTATTCCTTTATCTGCAAATCAAG

GTGGGCAACTTCATCCAGCTTTAGAAATCGATAATCAAATTTTACGTTTTAGCAAAGCAGGCGTAACTGATCCTTTAAAA

CAGGGTTTGTCACCATTTGAACGAATTGAATATCGTTATGATGCTGACCAAAAAAAACTATATCGTCTTAAATATACAAA

TTTAAATACTTCGAATAACGAGCAACCTTTATCAAGTACCTTATTAAGCCAAGTTGACCAATATCGAGTTATGGTTTTGA

CTCCGCAAGAAGTAACAAAATGGCCCGAAGTTAATATTGATCCAACAAAACCTAACGAGTTAAAAAAATTACCGAAAGGA

ATAAAAATCCAAGTTACAGTTGCAGGAGTAAGTTATGAATGGGTTTATAGCTTAAATCAAAGCAACTTGGCACTTTCTCA

GCAAGGTGGTTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(65-87)

Type II secretion system (T2SS), protein J (T2SSJ)

(121-250)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	92.478	83.395	0.771

Detailed information NTG0558462