Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KCV10_RS09385 Genome accession   NZ_CP073243
Coordinates   2023870..2024505 (-) Length   211 a.a.
NCBI ID   WP_212510853.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S63-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2018870..2029505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS09350 mlaE 2019199..2019975 (+) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  KCV10_RS09355 - 2019975..2020658 (+) 684 WP_019457797.1 outer membrane lipid asymmetry maintenance protein MlaD -
  KCV10_RS09360 - 2020685..2021326 (+) 642 WP_019457796.1 phospholipid-binding protein MlaC -
  KCV10_RS09365 - 2021338..2021625 (+) 288 WP_086496846.1 lipid asymmetry maintenance protein MlaB -
  KCV10_RS09370 - 2021699..2022712 (-) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  KCV10_RS09375 - 2022870..2023451 (+) 582 WP_004705346.1 TIGR00730 family Rossman fold protein -
  KCV10_RS09380 - 2023466..2023864 (+) 399 WP_019457794.1 NUDIX hydrolase -
  KCV10_RS09385 comF 2023870..2024505 (-) 636 WP_212510853.1 ComF family protein Machinery gene
  KCV10_RS09390 recG 2024498..2026543 (-) 2046 WP_039253566.1 ATP-dependent DNA helicase RecG -
  KCV10_RS09395 - 2026564..2027391 (+) 828 WP_019457791.1 NAD-dependent epimerase/dehydratase family protein -
  KCV10_RS09400 - 2027459..2028445 (+) 987 WP_039253617.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24580.83 Da        Isoelectric Point: 9.9089

>NTDB_id=558454 KCV10_RS09385 WP_212510853.1 2023870..2024505(-) (comF) [Acinetobacter seifertii strain S63-3]
MFKLFNPQYLFQLLSPCLLCEIGTRGKYSLCKECWEQLPWFKQTVQRNDQSVLVACHYTYPINRIIQQFKYEQKLHYQTL
LAEILQQIKFPKVQAIVPMPISKERLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAI
TQEKRRYRRVLIIDDVITTGSSISALSLVLKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=558454 KCV10_RS09385 WP_212510853.1 2023870..2024505(-) (comF) [Acinetobacter seifertii strain S63-3]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGCAA
ATACTCTCTTTGTAAAGAATGTTGGGAACAACTACCGTGGTTCAAGCAGACAGTCCAGCGTAATGATCAATCTGTTCTTG
TGGCCTGCCATTATACCTATCCAATTAACCGTATAATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAACCCTA
CTTGCTGAAATTTTACAGCAAATAAAATTTCCTAAAGTACAAGCAATTGTACCGATGCCCATTTCTAAAGAGCGTTTAAC
GGAGCGTGGTTTTAATCAATCATTATTACTTGCCAAACTCCTAAGCAAGCAATTAAAAATACCCGTTTGGCAGCCTGTCC
AACGCCTCAATGAACGTTCACAAAAAGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGATA
ACTCAAGAAAAACGGCGCTACCGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCCGCTTTAAG
TCTGGTGCTAAAACAGCTAGGGTGCACATCTATTTATGCAAGCTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

92.417

100

0.924
  comF Acinetobacter baumannii D1279779

91.469

100

0.915