Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KCV09_RS13790 Genome accession   NZ_CP073241
Coordinates   3004541..3005197 (-) Length   218 a.a.
NCBI ID   WP_048763050.1    Uniprot ID   A0A0M1I800
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2999541..3010197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS13755 mlaE 2999950..3000726 (+) 777 WP_004934483.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  KCV09_RS13760 - 3000726..3001394 (+) 669 WP_004934486.1 outer membrane lipid asymmetry maintenance protein MlaD -
  KCV09_RS13765 - 3001413..3002045 (+) 633 WP_004934488.1 phospholipid-binding protein MlaC -
  KCV09_RS13770 - 3002058..3002345 (+) 288 WP_025095677.1 lipid asymmetry maintenance protein MlaB -
  KCV09_RS13775 - 3002391..3003404 (-) 1014 WP_004934494.1 CorA family divalent cation transporter -
  KCV09_RS13780 - 3003562..3004146 (+) 585 WP_025095676.1 TIGR00730 family Rossman fold protein -
  KCV09_RS13785 - 3004116..3004589 (+) 474 WP_171495897.1 NUDIX domain-containing protein -
  KCV09_RS13790 comF 3004541..3005197 (-) 657 WP_048763050.1 ComF family protein Machinery gene
  KCV09_RS13795 recG 3005184..3007229 (-) 2046 WP_151746503.1 ATP-dependent DNA helicase RecG -
  KCV09_RS13800 - 3007253..3008080 (+) 828 WP_212515289.1 NAD(P)H-binding protein -
  KCV09_RS13805 - 3008198..3009187 (+) 990 WP_228301563.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24989.13 Da        Isoelectric Point: 8.8756

>NTDB_id=558422 KCV09_RS13790 WP_048763050.1 3004541..3005197(-) (comF) [Acinetobacter soli strain M3-1-68]
MPMFKAVYHSLHTLWQHTRHCPLCGHSAAHSPYVICTDCWQDLPWLNDSVLRHELNIQAACEYADPINQIVQQFKYHEKL
HHQRLLTQLILQLPLPRVQAIVPMPISTARLCERGYNQAMLIAEGVAKQLNLPIWQPVLRRAEHTQKGLSRLERIAGIEQ
QFVPDLRVRTRFRRVMIIDDVVTTGSSIYALSQALTTLGCQRIYPICVAAASVSREAR

Nucleotide


Download         Length: 657 bp        

>NTDB_id=558422 KCV09_RS13790 WP_048763050.1 3004541..3005197(-) (comF) [Acinetobacter soli strain M3-1-68]
ATGCCTATGTTTAAGGCAGTGTATCATTCATTACACACGCTCTGGCAGCACACGCGACATTGTCCGCTGTGCGGTCATTC
TGCCGCACACAGTCCATACGTCATTTGCACAGATTGCTGGCAAGATCTGCCGTGGCTCAATGATTCGGTGCTGCGCCATG
AATTGAACATTCAGGCAGCATGTGAATATGCCGACCCGATCAATCAGATTGTGCAGCAATTTAAATACCATGAAAAACTG
CATCATCAGCGCTTACTCACGCAACTGATTTTGCAACTTCCCTTACCGCGGGTTCAGGCCATTGTGCCAATGCCGATTTC
GACAGCGCGGCTTTGTGAACGTGGTTATAATCAAGCGATGCTGATTGCTGAAGGTGTCGCCAAACAGCTTAACCTTCCCA
TATGGCAACCCGTGCTGCGTCGGGCTGAACACACACAAAAGGGCTTAAGCCGATTAGAGCGCATCGCGGGTATTGAGCAG
CAATTCGTACCCGATTTGCGTGTGCGCACTCGCTTTCGGCGGGTCATGATTATCGATGATGTAGTCACGACAGGCAGCTC
AATTTACGCCTTGTCTCAAGCACTCACCACATTAGGATGCCAACGCATTTATCCGATCTGTGTCGCTGCGGCCTCTGTTT
CACGTGAAGCCAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1I800

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

54.286

96.33

0.523
  comF Acinetobacter baumannii D1279779

54.286

96.33

0.523