Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   KCV09_RS06260 Genome accession   NZ_CP073241
Coordinates   1363629..1364015 (-) Length   128 a.a.
NCBI ID   WP_004948134.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1358629..1369015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS06230 tadA 1358856..1359368 (-) 513 WP_004938709.1 tRNA adenosine(34) deaminase TadA -
  KCV09_RS06235 - 1359374..1360498 (-) 1125 WP_004948124.1 enoyl-CoA hydratase/isomerase family protein -
  KCV09_RS06240 ung 1360495..1361208 (-) 714 WP_004938711.1 uracil-DNA glycosylase -
  KCV09_RS06245 - 1361263..1361859 (-) 597 WP_025095495.1 6-carboxytetrahydropterin synthase -
  KCV09_RS06250 gspK 1362024..1362992 (-) 969 WP_151815518.1 type II secretion system minor pseudopilin GspK -
  KCV09_RS06255 xcpW 1363009..1363632 (-) 624 WP_212515690.1 type II secretion system minor pseudopilin GspJ Machinery gene
  KCV09_RS06260 xcpV 1363629..1364015 (-) 387 WP_004948134.1 type II secretion system minor pseudopilin GspI Machinery gene
  KCV09_RS06265 - 1364005..1364550 (-) 546 WP_004938724.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KCV09_RS06270 - 1364560..1365171 (-) 612 WP_004938726.1 TetR/AcrR family transcriptional regulator -
  KCV09_RS06275 - 1365210..1365983 (-) 774 WP_004948140.1 TatD family hydrolase -
  KCV09_RS06280 - 1365999..1366343 (-) 345 WP_119690241.1 PilZ domain-containing protein -
  KCV09_RS06285 - 1366346..1367332 (-) 987 WP_212515691.1 DNA polymerase III subunit delta' -
  KCV09_RS06290 kdsB 1367347..1368108 (-) 762 WP_151745924.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14260.44 Da        Isoelectric Point: 10.0033

>NTDB_id=558389 KCV09_RS06260 WP_004948134.1 1363629..1364015(-) (xcpV) [Acinetobacter soli strain M3-1-68]
MKTKGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAVLRTKAQFVAMNEAAMMQINREWMQGTSSKQVTSQGETWQV
DKTAQATISPNVQRIEIQISRFDPQQNKVEAGITHMVFFNYPPKENVS

Nucleotide


Download         Length: 387 bp        

>NTDB_id=558389 KCV09_RS06260 WP_004948134.1 1363629..1364015(-) (xcpV) [Acinetobacter soli strain M3-1-68]
ATGAAAACTAAAGGGTTTACATTATTAGAAGTGATGGTGGCGCTCGCGATTTTTGCAACCGCTGCGGTGGCCTTGACCAA
GCTCGGTATGCAGTATACTCAGTCTACGGCCAATGCCGTATTAAGAACCAAAGCACAATTCGTGGCAATGAACGAAGCCG
CCATGATGCAAATTAATCGTGAATGGATGCAAGGCACATCCTCAAAGCAAGTGACGTCTCAGGGTGAAACATGGCAAGTC
GATAAAACTGCGCAGGCGACGATTAGCCCAAACGTACAGCGGATTGAAATTCAGATCAGCCGCTTTGATCCTCAGCAAAA
CAAAGTTGAAGCGGGAATTACGCATATGGTGTTTTTCAATTATCCGCCTAAAGAAAACGTCTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-103)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.032

96.875

0.766