Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KCG51_RS07060 Genome accession   NZ_CP073119
Coordinates   1477452..1478255 (-) Length   267 a.a.
NCBI ID   WP_003680807.1    Uniprot ID   A0AAW6Y2T7
Organism   Neisseria subflava strain HP0069     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1472452..1483255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS07050 (KCG51_07070) - 1474629..1475927 (-) 1299 WP_070585699.1 adenylosuccinate synthase -
  KCG51_RS07055 (KCG51_07075) - 1475971..1477128 (-) 1158 WP_250580191.1 ATP phosphoribosyltransferase regulatory subunit -
  KCG51_RS07060 (KCG51_07080) comL 1477452..1478255 (-) 804 WP_003680807.1 outer membrane protein assembly factor BamD Machinery gene
  KCG51_RS07065 (KCG51_07085) rluD 1478254..1479378 (+) 1125 WP_049332554.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KCG51_RS07070 (KCG51_07090) pgeF 1479460..1480230 (+) 771 WP_250580193.1 peptidoglycan editing factor PgeF -
  KCG51_RS07075 (KCG51_07095) lptE 1480351..1480830 (+) 480 WP_250580195.1 LPS assembly lipoprotein LptE -
  KCG51_RS07080 (KCG51_07100) holA 1480830..1481831 (+) 1002 WP_250580198.1 DNA polymerase III subunit delta -
  KCG51_RS07085 (KCG51_07105) - 1481978..1482397 (+) 420 WP_250580199.1 hypothetical protein -
  KCG51_RS07090 (KCG51_07110) - 1482489..1483013 (+) 525 WP_070608830.1 RDD family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31019.98 Da        Isoelectric Point: 8.5345

>NTDB_id=558170 KCG51_RS07060 WP_003680807.1 1477452..1478255(-) (comL) [Neisseria subflava strain HP0069]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEISVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=558170 KCG51_RS07060 WP_003680807.1 1477452..1478255(-) (comL) [Neisseria subflava strain HP0069]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAATTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCACAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATTGCGCGCTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGTTTGGTCCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGATGCTTATCAAGCGTTTGCCGAGTTGGTTCAACGTTATCCAAACAGC
AAATACGCTGCCGATGCAACTGAGCGTATGGCCAAGCTGGTGGACGCTTTGGGCGGTAACGAGATATCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTCGCAGCGGCCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTACG
TCGAAGAAGCTTTGGCGATGATGGAATTGGCGTACAAAAAACTGGACAAGCCGCAACTGGCTGCCGATACACGCCGCGTT
TTGGAAACCAACTTTCCGCAAAGCCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
CTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.346

99.625

0.88
  comL Neisseria gonorrhoeae MS11

87.594

99.625

0.873