Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   L1704_RS10520 Genome accession   NZ_CP091107
Coordinates   2051548..2052180 (+) Length   210 a.a.
NCBI ID   WP_257788723.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC109     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2046548..2057180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1704_RS10485 (L1704_10485) - 2046650..2046976 (-) 327 WP_010906269.1 lactococcin 972 family bacteriocin -
  L1704_RS10490 (L1704_10490) - 2047276..2048004 (-) 729 WP_004254546.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  L1704_RS10495 (L1704_10495) - 2048197..2048418 (+) 222 WP_010906270.1 YqgQ family protein -
  L1704_RS10500 (L1704_10500) - 2048452..2049423 (+) 972 WP_004254542.1 ROK family glucokinase -
  L1704_RS10505 (L1704_10505) - 2049426..2049812 (+) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  L1704_RS10510 (L1704_10510) - 2049895..2050341 (-) 447 WP_004254538.1 Dps family protein -
  L1704_RS10515 (L1704_10515) - 2050618..2051508 (+) 891 WP_081196253.1 IS982-like element ISLll1 family transposase -
  L1704_RS10520 (L1704_10520) cclA/cilC 2051548..2052180 (+) 633 WP_257788723.1 A24 family peptidase Machinery gene
  L1704_RS10525 (L1704_10525) dinB 2052131..2053222 (-) 1092 WP_058221601.1 DNA polymerase IV -
  L1704_RS10530 (L1704_10530) - 2053301..2053792 (-) 492 WP_010906273.1 prolyl-tRNA synthetase associated domain-containing protein -
  L1704_RS10535 (L1704_10535) - 2053871..2055364 (-) 1494 WP_014570780.1 basic amino acid/polyamine antiporter -
  L1704_RS10540 (L1704_10540) - 2055556..2056686 (-) 1131 WP_014570781.1 aminotransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24432.34 Da        Isoelectric Point: 9.0973

>NTDB_id=558154 L1704_RS10520 WP_257788723.1 2051548..2052180(+) (cclA/cilC) [Lactococcus lactis subsp. lactis strain UC109]
MFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQISSGSHCRYCKSKIPYLYVFLEFSSALIFVLAWVNY
LKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDFLWFFTASFSLT
FLNEMLLLQIACSLGIIYYLITKKRVEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide


Download         Length: 633 bp        

>NTDB_id=558154 L1704_RS10520 WP_257788723.1 2051548..2052180(+) (cclA/cilC) [Lactococcus lactis subsp. lactis strain UC109]
ATTTTTGGCTCCTTTTTTGGCTTAATAGTTGACCGTATTCCACTAAGAAAATCAATTATTTTTGGACGCTCACATTGTGA
TTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTTCTCAAATAAGCTCTGGCTCACATTGCCGTTATT
GTAAAAGTAAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCAGCTTTAATTTTTGTTTTAGCTTGGGTAAATTAT
CTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATCTGCTTTTGATTATCGTCAGCACAGTTTTCCTTT
TGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTCTTTCTCCCCTTTTCTATTTTTGGCTTATTTTAG
CCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTTTTATGGTTTTTTACCGCTTCATTTTCTCTAACT
TTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCACTTGGTATCATTTATTATCTAATCACAAAAAAACGAGTTGA
AATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTTTTGGGCACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(1-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae Rx1

37.019

99.048

0.367
  cclA/cilC Streptococcus pneumoniae D39

37.019

99.048

0.367
  cclA/cilC Streptococcus pneumoniae R6

37.019

99.048

0.367
  cclA/cilC Streptococcus pneumoniae TIGR4

36.538

99.048

0.362