Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   KCG51_RS03170 Genome accession   NZ_CP073119
Coordinates   653272..653913 (-) Length   213 a.a.
NCBI ID   WP_250579091.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 643151..659561 653272..653913 within 0


Gene organization within MGE regions


Location: 643151..659561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS03120 (KCG51_03160) thrB 643151..644068 (-) 918 WP_250579088.1 homoserine kinase -
  KCG51_RS03125 (KCG51_03165) - 644229..645235 (+) 1007 Protein_604 IS5 family transposase -
  KCG51_RS03155 (KCG51_03195) comE 651369..651656 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG51_RS03160 comP 651900..652172 (+) 273 WP_254342781.1 type IV pilin protein Machinery gene
  KCG51_RS03165 (KCG51_03205) - 652403..653227 (-) 825 WP_070713410.1 undecaprenyl-diphosphate phosphatase -
  KCG51_RS03170 (KCG51_03210) dsbA1 653272..653913 (-) 642 WP_250579091.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG51_RS03175 (KCG51_03215) - 653925..655040 (-) 1116 WP_250579092.1 SPOR domain-containing protein -
  KCG51_RS03180 (KCG51_03220) - 655195..656690 (-) 1496 Protein_610 YifB family Mg chelatase-like AAA ATPase -
  KCG51_RS03185 (KCG51_03225) - 656704..657024 (-) 321 WP_003684455.1 accessory factor UbiK family protein -
  KCG51_RS03190 (KCG51_03230) metK 657134..658303 (-) 1170 WP_254342784.1 methionine adenosyltransferase -
  KCG51_RS03195 (KCG51_03235) - 658835..659032 (+) 198 WP_107858221.1 hypothetical protein -
  KCG51_RS03200 (KCG51_03240) - 659100..659561 (+) 462 WP_254342786.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23694.55 Da        Isoelectric Point: 9.9901

>NTDB_id=558154 KCG51_RS03170 WP_250579091.1 653272..653913(-) (dsbA1) [Neisseria subflava strain HP0069]
MKQRIKQTIAALSLSLLSLSAQAATEGVDYTVLSRPIPQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMPEMLGLAKVAAAVNLSGLKYQANPVIFKAVYEQKINLADTNVFRSWVGKQTGFDSKKLLQAYNSPAAALAAAKM
QQLTETYRIENTPTVIVGGKYKVNFSGTDWKAGMKTIDELIVKVRREQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=558154 KCG51_RS03170 WP_250579091.1 653272..653913(-) (dsbA1) [Neisseria subflava strain HP0069]
ATGAAGCAGCGTATAAAACAAACTATTGCTGCACTCAGCCTGAGCCTGCTCAGCCTGAGTGCGCAAGCTGCTACCGAGGG
CGTGGACTATACTGTTCTTAGTCGTCCTATTCCGCAGCAACAAGCCGGCAAAATTGAAGTGCTTGAGTTTTTCGGCTACT
TCTGCGTCCATTGTTACCATCTCGATCCGGTTTTGTTGCAACACAGTAAAACCTTCGCTAAAGATGTTTCCTTACGGACA
GAGCACGTCGTTTGGATGCCTGAAATGTTGGGGTTGGCCAAAGTGGCCGCAGCCGTCAATCTTTCAGGTTTGAAATATCA
AGCCAATCCAGTCATCTTCAAAGCAGTTTACGAACAAAAAATCAACCTGGCCGATACCAATGTATTCCGATCATGGGTAG
GTAAACAGACGGGTTTTGACAGTAAAAAACTGCTTCAAGCCTACAACAGTCCTGCTGCCGCATTGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATCGTCGGTGGTAAATACAAAGTCAATTTCAGCGG
TACCGACTGGAAAGCCGGTATGAAAACCATAGACGAGCTCATCGTCAAAGTCCGCCGCGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

59.893

87.793

0.526
  dsbA2 Neisseria meningitidis MC58

59.239

86.385

0.512