Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KCG55_RS08825 Genome accession   NZ_CP073117
Coordinates   1849665..1850468 (+) Length   267 a.a.
NCBI ID   WP_004519923.1    Uniprot ID   A0AB36GAR3
Organism   Neisseria subflava strain HP0015     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1844665..1855468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS08795 (KCG55_08870) - 1844907..1845431 (-) 525 WP_004519927.1 RDD family protein -
  KCG55_RS08800 (KCG55_08875) - 1845523..1845942 (-) 420 WP_003746427.1 hypothetical protein -
  KCG55_RS08805 (KCG55_08880) holA 1846089..1847090 (-) 1002 WP_254322793.1 DNA polymerase III subunit delta -
  KCG55_RS08810 (KCG55_08885) lptE 1847090..1847569 (-) 480 WP_254322794.1 LPS assembly lipoprotein LptE -
  KCG55_RS08815 (KCG55_08890) pgeF 1847691..1848461 (-) 771 WP_254322795.1 peptidoglycan editing factor PgeF -
  KCG55_RS08820 (KCG55_08895) rluD 1848542..1849666 (-) 1125 WP_254322796.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KCG55_RS08825 (KCG55_08900) comL 1849665..1850468 (+) 804 WP_004519923.1 outer membrane protein assembly factor BamD Machinery gene
  KCG55_RS08830 (KCG55_08905) - 1850791..1851948 (+) 1158 WP_250580191.1 ATP phosphoribosyltransferase regulatory subunit -
  KCG55_RS08835 (KCG55_08910) - 1851992..1853290 (+) 1299 WP_070585699.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31038.02 Da        Isoelectric Point: 8.5345

>NTDB_id=558131 KCG55_RS08825 WP_004519923.1 1849665..1850468(+) (comL) [Neisseria subflava strain HP0015]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEMSVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=558131 KCG55_RS08825 WP_004519923.1 1849665..1850468(+) (comL) [Neisseria subflava strain HP0015]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAATTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCCCAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATTGCGCGTTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGTTTGGTCCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGATGCTTATCAGGCGTTTGCCGAGTTGGTTCAACGTTATCCAAACAGC
AAATATGCAGCTGATGCAACCGAGCGTATGGCCAAGCTGGTGGACGCTTTGGGCGGTAACGAGATGTCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTCGCAGCGGCCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTACG
TTGAAGAAGCTTTGGCGATGATGGAACTGGCGTACAAAAAACTGGACAAGCCGCAACTGGCTGCCGATACACGCCGTGTT
TTGGAAACTAACTTCCCGCAAAGCCCGTTTTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
CTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.722

99.625

0.884
  comL Neisseria gonorrhoeae MS11

87.97

99.625

0.876