Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KCG56_RS04660 Genome accession   NZ_CP073116
Coordinates   971506..972309 (-) Length   267 a.a.
NCBI ID   WP_049328486.1    Uniprot ID   A0A9X9N4D2
Organism   Neisseria subflava strain TT0073     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 966506..977309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS04650 (KCG56_04690) - 968683..969981 (-) 1299 WP_070585699.1 adenylosuccinate synthase -
  KCG56_RS04655 (KCG56_04695) - 970025..971182 (-) 1158 WP_254322062.1 ATP phosphoribosyltransferase regulatory subunit -
  KCG56_RS04660 (KCG56_04700) comL 971506..972309 (-) 804 WP_049328486.1 outer membrane protein assembly factor BamD Machinery gene
  KCG56_RS04665 (KCG56_04705) rluD 972308..973432 (+) 1125 WP_254322063.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KCG56_RS04670 (KCG56_04710) - 973538..974110 (+) 573 WP_254322064.1 hypothetical protein -
  KCG56_RS04675 (KCG56_04715) pgeF 974107..974877 (+) 771 WP_254322065.1 peptidoglycan editing factor PgeF -
  KCG56_RS04680 (KCG56_04720) lptE 974998..975477 (+) 480 WP_254322066.1 LPS assembly lipoprotein LptE -
  KCG56_RS04685 (KCG56_04725) holA 975477..976478 (+) 1002 WP_254322067.1 DNA polymerase III subunit delta -
  KCG56_RS04690 (KCG56_04730) - 976625..977044 (+) 420 WP_003746427.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31066.07 Da        Isoelectric Point: 8.5345

>NTDB_id=558076 KCG56_RS04660 WP_049328486.1 971506..972309(-) (comL) [Neisseria subflava strain TT0073]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEMSVARYYMKRGAYVAAVNRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=558076 KCG56_RS04660 WP_049328486.1 971506..972309(-) (comL) [Neisseria subflava strain TT0073]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAATTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCACAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATTGCGCGTTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCACTGTACTTGAAAGGTTTGGTTCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGATGCTTATCAGGCGTTTGCAGAGTTGGTGCAACGTTATCCAAACAGC
AAATACGCTGCCGATGCAACCGAGCGTATGGCCAAGCTGGTGGACGCTTTGGGCGGTAACGAGATGTCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTCGCAGCAGTCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTACG
TTGAAGAAGCTTTGGCGATGATGGAATTGGCGTACAAAAAACTGGATAAGCCGCAACTGGCTGCCGATACACGCCGCGTT
TTGGAAACCAACTTCCCGCAAAGCCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCGTGGTGGCGTTACTGGCG
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.346

99.625

0.88
  comL Neisseria gonorrhoeae MS11

87.594

99.625

0.873