Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KCG54_RS04620 Genome accession   NZ_CP073115
Coordinates   962871..963674 (+) Length   267 a.a.
NCBI ID   WP_070585697.1    Uniprot ID   A0A9X9N276
Organism   Neisseria subflava strain TT0077     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 957871..968674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS04590 (KCG54_04605) - 958136..958555 (-) 420 WP_003746427.1 hypothetical protein -
  KCG54_RS04595 (KCG54_04610) holA 958702..959703 (-) 1002 WP_070765015.1 DNA polymerase III subunit delta -
  KCG54_RS04600 (KCG54_04615) lptE 959703..960182 (-) 480 WP_070589273.1 LPS assembly lipoprotein LptE -
  KCG54_RS04605 (KCG54_04620) pgeF 960303..961073 (-) 771 WP_254324798.1 peptidoglycan editing factor PgeF -
  KCG54_RS04610 (KCG54_04625) - 961070..961654 (-) 585 WP_254324799.1 hypothetical protein -
  KCG54_RS04615 (KCG54_04630) rluD 961748..962872 (-) 1125 WP_254324800.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KCG54_RS04620 (KCG54_04635) comL 962871..963674 (+) 804 WP_070585697.1 outer membrane protein assembly factor BamD Machinery gene
  KCG54_RS04625 (KCG54_04640) - 964015..965172 (+) 1158 WP_254324801.1 ATP phosphoribosyltransferase regulatory subunit -
  KCG54_RS04630 (KCG54_04645) - 965216..966514 (+) 1299 WP_254324802.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31007.99 Da        Isoelectric Point: 8.5345

>NTDB_id=558032 KCG54_RS04620 WP_070585697.1 962871..963674(+) (comL) [Neisseria subflava strain TT0077]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEMSVARYYMKRGAYVAAANRAQKIVGRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=558032 KCG54_RS04620 WP_070585697.1 962871..963674(+) (comL) [Neisseria subflava strain TT0077]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAATTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCCCAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATTGCACGCTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGTTTGGTCCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGCGATCCGAAAGCCAACCGCGATGCTTATCAGGCGTTTGCCGAGTTGGTGCAACGTTATCCAAACAGC
AAATACGCTGCCGATGCAACCGAGCGTATGGCCAAGCTGGTGGACGCTTTGGGTGGTAACGAGATGTCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTCGCAGCGGCCAACCGTGCGCAAAAAATCGTCGGCCGTTACCAAAATACCCGTTACG
TCGAAGAAGCTTTGGCGATGATGGAATTGGCGTATAAAAAACTGGATAAGCCGCAACTGGCTGCCGATACTCGCCGTGTC
TTGGAAACCAACTTCCCGCAAAGCCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

89.098

99.625

0.888
  comL Neisseria gonorrhoeae MS11

88.346

99.625

0.88