Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   L1O91_RS03245 Genome accession   NZ_CP091066
Coordinates   694088..695869 (+) Length   593 a.a.
NCBI ID   WP_077446562.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UMCG579     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 689088..700869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O91_RS03235 (L1O91_03235) ltaS 689982..691922 (+) 1941 WP_054189246.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  L1O91_RS03240 (L1O91_03240) - 692193..694076 (+) 1884 WP_077446561.1 ABC-F family ATP-binding cassette domain-containing protein -
  L1O91_RS03245 (L1O91_03245) recQ 694088..695869 (+) 1782 WP_077446562.1 DNA helicase RecQ Machinery gene
  L1O91_RS03250 (L1O91_03250) - 696089..697066 (+) 978 WP_054189249.1 ABC transporter ATP-binding protein -
  L1O91_RS03255 (L1O91_03255) - 697059..698573 (+) 1515 WP_054189250.1 ABC transporter permease/substrate-binding protein -
  L1O91_RS03260 (L1O91_03260) hisC 698813..699871 (+) 1059 WP_054189251.1 histidinol-phosphate transaminase -
  L1O91_RS03265 (L1O91_03265) - 700029..700571 (+) 543 WP_000197261.1 5'-3'-deoxyribonucleotidase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68172.04 Da        Isoelectric Point: 6.6848

>NTDB_id=558014 L1O91_RS03245 WP_077446562.1 694088..695869(+) (recQ) [Staphylococcus aureus strain UMCG579]
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLDGTTIVISPLISLMKDQVDQLKAMGIQ
AAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFT
LPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFVLDYIKTHDEDAGIIYCSTRKQVE
ELQEALESQKIDSVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRD
GLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDK
SYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEI
LMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRALFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPAS
KQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=558014 L1O91_RS03245 WP_077446562.1 694088..695869(+) (recQ) [Staphylococcus aureus strain UMCG579]
ATGATGCAACAAACATTATCGCATTACTTTGGGTATGAAACGTTTCGACCAGGACAAGAAGAAATTATTAGTAAAGTATT
AGACCATCGTAATGTGCTTGGTGTCTTACCAACTGGTGGAGGTAAGTCTATATGCTATCAAGTACCAGGTTTATTGTTAG
ATGGTACAACAATTGTAATAAGTCCACTAATATCATTAATGAAAGATCAGGTGGATCAATTAAAAGCGATGGGAATTCAA
GCTGCTTTTTTAAATAGTAGTTTGACTCAAAAAGAGCAACAACGTATTGAAAAAGCATTATCAAATGGAGAAATTCAATT
TTTGTATGTTGCACCAGAACGATTTGAAAACCGATATTTTTTAAATATGCTTCAGCGTATAAAGATTCACTTAGTCGCGT
TTGATGAAGCGCATTGTATATCTAAATGGGGACATGATTTCAGACCGAGTTATCAAAACGTCATTTCTAAAGTATTTACG
TTACCTCAAGATTTTACAATAATAGCGTTGACAGCAACTGCCACGGTTGAAGTACAGCAAGATATTAGAGAAAAGTTGAA
TATCGCTCAAACTGATCAAATTAAAACGAGTACTAAGCGTAGAAACTTAATTTTTAAAGTAAATCCTACTTATCAACGTC
AAAAATTTGTATTGGATTATATTAAAACACACGATGAAGATGCAGGTATTATTTATTGTTCTACACGTAAGCAAGTTGAA
GAGCTTCAAGAAGCCTTAGAAAGCCAGAAAATTGATAGTGTGATATATCACGCAGGTTTGAGCAATAAAGAGAGAGAAGA
AGCGCAGAATGATTTCTTATTTGATCGTGTTAAAGTAGTCGTTGCTACGAACGCGTTTGGTATGGGTATTGATAAATCTA
ATGTACGTTTTGTTATTCATTATAATATGCCTGGAGATTTAGAATCTTATTATCAAGAAGCGGGACGTGCAGGTCGTGAC
GGATTGAAAAGTGAATGTATTCTTTTGTTTAGCGAACGCGATATCAATTTACACGAGTATTTTATTACTGTCTCACAAGC
TGATGATGACTATAAAGATAAAATGGGCGAAAAGTTAACTAAAATGATTCAATATACAAAAACAAAAAAATGTTTAGAAG
CAACAATTGTCCATTATTTTGAACCGAATGAAAAATTAGAAGAATGTGAACAATGTAGTAATTGTGTTCAACAAGATAAA
TCATATAATATGACACAAGAAGCTAAGATGATTATTAGTTGCATCGCTCGTATGAAACAACAAGAGAGTTATAGTGTTAT
CATTCAAGTGTTAAGAGGAGAGTCAACAGATTATATTAAGTATAAAGGTTATGACCAAATTTCAACCCATGGTTTAATGA
AAGGTTACACAACATCAGAATTAAGTCACTTAATAGATGAATTAAGATTCAAAGGGTTCTTAAATGAAAATGATGAAATA
TTAATGTGTGATACTTCAATTAAAAAATTACTCAGTAATGAAGTAGAAGTATTCACAACACCATTTAAGCAAAAGGCGAC
TGAAAAAGTATTTATAAATACGGTTGAAGGTGTTGATCGAGCTTTATTCAGTCAGTTGGTAGAAGTTCGTAAAAAATTAA
GTGACAAATTAACGATAGCACCTGTAAGTATATTTTCTGATTACACGTTGGAGGAATTTGCTAAACGTAAACCTGCTTCG
AAACAAGACATGATTAATATTGATGGCGTAGGTAGTTACAAATTAAAACATTATTGTCCGGCATTTTTAGAAACGATTCA
AAATTATAAAGCCAAAGTATAG

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(333-395)

HRDC domain (HRDC)

(520-586)

Helicase conserved C-terminal domain (Helicase_C)

(218-320)

RQC domain (RQC)

(400-500)

DEAD/DEAH box helicase (DEAD)

(17-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

42.373

99.494

0.422