Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KCG52_RS10240 Genome accession   NZ_CP073114
Coordinates   2170346..2171149 (+) Length   267 a.a.
NCBI ID   WP_004519923.1    Uniprot ID   A0AB36GAR3
Organism   Neisseria subflava strain HP0048     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2165346..2176149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS10210 (KCG52_10260) - 2165588..2166112 (-) 525 WP_249551776.1 RDD family protein -
  KCG52_RS10215 (KCG52_10265) - 2166204..2166623 (-) 420 WP_003746427.1 hypothetical protein -
  KCG52_RS10220 (KCG52_10270) holA 2166770..2167771 (-) 1002 WP_254344190.1 DNA polymerase III subunit delta -
  KCG52_RS10225 (KCG52_10275) lptE 2167771..2168250 (-) 480 WP_254322066.1 LPS assembly lipoprotein LptE -
  KCG52_RS10230 (KCG52_10280) pgeF 2168371..2169141 (-) 771 WP_107791853.1 peptidoglycan editing factor PgeF -
  KCG52_RS10235 (KCG52_10285) rluD 2169223..2170347 (-) 1125 WP_049348199.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KCG52_RS10240 (KCG52_10290) comL 2170346..2171149 (+) 804 WP_004519923.1 outer membrane protein assembly factor BamD Machinery gene
  KCG52_RS10245 (KCG52_10295) - 2171471..2172628 (+) 1158 WP_004519921.1 ATP phosphoribosyltransferase regulatory subunit -
  KCG52_RS10250 (KCG52_10300) - 2172672..2173970 (+) 1299 WP_049322193.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31038.02 Da        Isoelectric Point: 8.5345

>NTDB_id=558014 KCG52_RS10240 WP_004519923.1 2170346..2171149(+) (comL) [Neisseria subflava strain HP0048]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEMSVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=558014 KCG52_RS10240 WP_004519923.1 2170346..2171149(+) (comL) [Neisseria subflava strain HP0048]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAGTTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTCCCAAACGGCCGCTATGCACAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATCGCGCGCTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGTTTGGTCCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGTGACCCGAAAGCCAACCGCGATGCTTACCAGGCGTTTGCCGAGCTGGTGCAACGTTATCCAAACAGC
AAATACGCTGCCGATGCAACCGAACGCATGGCCAAGCTGGTGGACGCTTTGGGCGGTAACGAAATGTCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTCGCAGCGGCCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTATG
TCGAAGAAGCTTTGGCGATGATGGAATTGGCGTACAAAAAACTGGACAAGCCGCAACTGGCCGCCGATACGCGCCGCGTT
TTGGAAACCAACTTCCCGCAAAGCCCGTTCTTGCAACACGAGTGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.722

99.625

0.884
  comL Neisseria gonorrhoeae MS11

87.97

99.625

0.876