Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   L1P11_RS24445 Genome accession   NZ_CP091044
Coordinates   4929710..4931119 (+) Length   469 a.a.
NCBI ID   WP_001188776.1    Uniprot ID   Q3YVA5
Organism   Escherichia coli strain STEC346     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4924710..4936119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P11_RS24430 typA 4924725..4926548 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  L1P11_RS24435 glnA 4926921..4928330 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  L1P11_RS24440 glnL 4928649..4929698 (+) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  L1P11_RS24445 luxO 4929710..4931119 (+) 1410 WP_001188776.1 nitrogen regulation protein NR(I) Regulator
  L1P11_RS24450 yshB 4931231..4931341 (+) 111 WP_000893994.1 YshB family small membrane protein -
  L1P11_RS24455 hemN 4931531..4932904 (-) 1374 WP_000116090.1 oxygen-independent coproporphyrinogen III oxidase -
  L1P11_RS24460 yihI 4933093..4933602 (-) 510 WP_001350037.1 Der GTPase-activating protein YihI -
  L1P11_RS24465 - 4933721..4933887 (-) 167 Protein_4802 hypothetical protein -
  L1P11_RS24470 yihA 4934184..4934816 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52268.77 Da        Isoelectric Point: 6.4561

>NTDB_id=557910 L1P11_RS24445 WP_001188776.1 4929710..4931119(+) (luxO) [Escherichia coli strain STEC346]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNIQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=557910 L1P11_RS24445 WP_001188776.1 4929710..4931119(+) (luxO) [Escherichia coli strain STEC346]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCAATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTCGCGCTGGTTGAGCGCGCCATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATATTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
CGCCAAAGCGCCGTTTATCGCGCTGAATATGGCAGCTATCCCAAAAGATTTGATCGAATCAGAACTGTTTGGCCACGAGA
AAGGCGCGTTTACTGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCCGATGGCGGTACATTATTCCTCGACGAA
ATTGGTGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTACCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATCTGCCGCCGCTGCGCGAACGTCGGGAAGATATTCCCCGT
CTGGCGCGCCATTTTTTACAGGTTGCCGCGCGCGAACTGGGCGTAGAAGCGAAGTTACTGCATCCGGAAACCGAAGCTGC
TCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTGATGGCCGCCGGGC
AGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGCAAATGCAACCGGAC
AGCTGGGCGACGCTTCTTGCGCAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAATCTGCTTTCCGAAGCGCAGCC
AGAGCTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGCCGCAACACCCTGACGCGTAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YVA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.871

98.934

0.394
  pilR Pseudomonas aeruginosa PAK

39.066

100

0.392