Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   INT76_RS01410 Genome accession   NZ_CP073084
Coordinates   291432..292658 (+) Length   408 a.a.
NCBI ID   WP_212571384.1    Uniprot ID   -
Organism   Streptococcus oriscaviae strain HKU75     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 286432..297658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INT76_RS01385 (INT76_01385) - 288275..288610 (+) 336 WP_212571373.1 hypothetical protein -
  INT76_RS01390 (INT76_01390) - 288707..289666 (+) 960 WP_212571375.1 ROK family glucokinase -
  INT76_RS01395 (INT76_01395) - 289763..290602 (+) 840 WP_212571377.1 thymidylate synthase -
  INT76_RS01400 (INT76_01400) - 290719..291231 (+) 513 WP_212571379.1 dihydrofolate reductase -
  INT76_RS01405 (INT76_01405) - 291235..291405 (+) 171 WP_212571381.1 hypothetical protein -
  INT76_RS01410 (INT76_01410) clpX 291432..292658 (+) 1227 WP_212571384.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  INT76_RS01415 (INT76_01415) yihA 292739..293329 (+) 591 WP_212571386.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  INT76_RS01420 (INT76_01420) rplJ 293581..294078 (+) 498 WP_212571389.1 50S ribosomal protein L10 -
  INT76_RS01425 (INT76_01425) rplL 294149..294514 (+) 366 WP_212571391.1 50S ribosomal protein L7/L12 -
  INT76_RS01430 (INT76_01430) - 294714..295253 (+) 540 WP_212571393.1 GNAT family N-acetyltransferase -
  INT76_RS01435 (INT76_01435) - 295461..296015 (+) 555 WP_212571395.1 carboxymuconolactone decarboxylase family protein -
  INT76_RS01440 (INT76_01440) - 296061..297005 (+) 945 WP_212571397.1 TDT family transporter -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45448.94 Da        Isoelectric Point: 4.5922

>NTDB_id=557818 INT76_RS01410 WP_212571384.1 291432..292658(+) (clpX) [Streptococcus oriscaviae strain HKU75]
MAVHNHPELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDNRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNVDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIEEKDSYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTDDLIRIL
TEPKNALVKQYQTLLSYDDVELEFDQDALEEIAQKAIERKTGARGLRSIIEETMLDVMFEVPSQSNVKRVRITKDAVKGI
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=557818 INT76_RS01410 WP_212571384.1 291432..292658(+) (clpX) [Streptococcus oriscaviae strain HKU75]
ATGGCTGTACACAACCATCCTGAGCTAATTTACTGCTCTTTTTGCGGCAAAAATCAAGAAGAAGTAAAGAAAATTATCGC
AGGAAATAACGTTTTTATTTGTAACGAATGTGTCGAATTGGCACAGGAAATTATTCGAGAAGAGTTAGCAGAAGAAGTCC
TGACAGACCTGGCTGATACTCCGAAACCACAAGAGCTGCTCAATATTTTAAACAACTATGTTATTGGACAGGACCGTGCG
AAGCGGGCCTTGGCGGTAGCTGTTTACAATCACTATAAACGGATTAACTTCCAAGATAACCGTGATGAGAATGATGTAGA
TTTACAGAAATCTAATATCCTAATGATTGGTCCAACTGGTTCTGGCAAGACATTTTTGGCACAAACCCTTGCAAAGAGCC
TCAATGTTCCCTTTGCCATTGCGGATGCGACAGCGTTGACAGAAGCAGGTTATGTAGGGGAGGATGTTGAAAATATCCTA
CTCAAACTCCTTCAGGCAGCAGACTTTAATGTTGACCGTGCAGAAAGAGGGATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGTGACGTATCGGGTGAAGGAGTCCAACAGGCTCTCCTGAAAATTATTG
AAGGAACTGTTGCCAGCGTTCCACCACAAGGCGGTCGTAAGCATCCAAACCAAGAAATGATACATGTTGATACCAAAAAT
ATTCTCTTCATTGTAGGCGGTGCTTTTGATGGCATAGAGGAGATTGTCAAGCAGCGTCTTGGAGAGAAAATTATCGGCTT
TGGCCAAAACAATCGAGCTATCGAAGAAAAAGATTCCTACATGCAGCATATTATTGCAGATGATATTCAGAAGTTTGGTA
TCATTCCAGAATTGATAGGCCGCTTACCTGTTTTTGCTGCCTTGGATCAGTTGACCACCGATGATTTGATTCGTATTCTG
ACTGAACCTAAAAACGCTCTTGTAAAGCAATACCAGACTCTCCTTTCATACGATGATGTAGAGTTGGAGTTTGACCAAGA
TGCATTGGAAGAAATCGCCCAAAAGGCTATTGAACGTAAAACCGGTGCTCGTGGACTACGCTCCATTATCGAGGAAACCA
TGTTGGATGTCATGTTTGAAGTGCCTAGTCAAAGTAATGTGAAACGTGTTCGTATCACCAAGGATGCGGTTAAGGGGATA
GAAAAACCTCTACTCGAAACGGCCTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

85.464

97.794

0.836
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.458

98.529

0.576