Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L1P14_RS05855 Genome accession   NZ_CP091029
Coordinates   1191333..1192070 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain STEC384     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1186333..1197070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P14_RS05825 yfiL 1186491..1186856 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  L1P14_RS05830 aroF 1187066..1188136 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  L1P14_RS05835 tyrA 1188147..1189268 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  L1P14_RS05840 pheA 1189311..1190471 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  L1P14_RS05845 pheL 1190570..1190617 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  L1P14_RS05850 raiA 1190721..1191062 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L1P14_RS05855 comL 1191333..1192070 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  L1P14_RS05860 rluD 1192205..1193185 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L1P14_RS05865 yfiH 1193182..1193913 (+) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  L1P14_RS05870 clpC 1194043..1196616 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=557780 L1P14_RS05855 WP_000197686.1 1191333..1192070(-) (comL) [Escherichia coli strain STEC384]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=557780 L1P14_RS05855 WP_000197686.1 1191333..1192070(-) (comL) [Escherichia coli strain STEC384]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376