Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   L1P12_RS09945 Genome accession   NZ_CP091026
Coordinates   2072851..2073507 (+) Length   218 a.a.
NCBI ID   WP_000611336.1    Uniprot ID   -
Organism   Escherichia coli strain STEC383     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2067851..2078507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P12_RS09915 dcyD 2068730..2069716 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  L1P12_RS09920 tcyL 2069731..2070399 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  L1P12_RS09925 tcyN 2070396..2071148 (+) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  L1P12_RS09930 sdiA 2071378..2072100 (+) 723 WP_001152713.1 transcriptional regulator SdiA -
  L1P12_RS09935 yecF 2072168..2072392 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  L1P12_RS09940 yecU 2072379..2072555 (-) 177 WP_000590344.1 protein YecU -
  L1P12_RS26380 - 2072593..2072709 (-) 117 Protein_1954 transcriptional regulator -
  L1P12_RS09945 letA 2072851..2073507 (+) 657 WP_000611336.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  L1P12_RS09950 uvrC 2073504..2075336 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  L1P12_RS09955 pgsA 2075393..2075941 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L1P12_RS09975 yecA 2076591..2077256 (+) 666 WP_000847882.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23878.58 Da        Isoelectric Point: 6.6397

>NTDB_id=557713 L1P12_RS09945 WP_000611336.1 2072851..2073507(+) (letA) [Escherichia coli strain STEC383]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITNGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=557713 L1P12_RS09945 WP_000611336.1 2072851..2073507(+) (letA) [Escherichia coli strain STEC383]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAATGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486