Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   KBU60_RS05015 Genome accession   NZ_CP073068
Coordinates   1070108..1071511 (+) Length   467 a.a.
NCBI ID   WP_005461534.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FB-11     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1065108..1076511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS04995 (KBU60_04995) rsxB 1065619..1066215 (-) 597 WP_005480813.1 electron transport complex subunit RsxB -
  KBU60_RS05000 (KBU60_05000) rsxA 1066219..1066797 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  KBU60_RS05010 (KBU60_05010) uvrB 1067788..1069818 (+) 2031 WP_140287904.1 excinuclease ABC subunit UvrB -
  KBU60_RS05015 (KBU60_05015) luxO 1070108..1071511 (+) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  KBU60_RS05020 (KBU60_05020) luxU 1071514..1071852 (+) 339 WP_025542502.1 quorum-sensing phosphorelay protein LuxU -
  KBU60_RS05025 (KBU60_05025) - 1071929..1072822 (-) 894 WP_005494500.1 YvcK family protein -
  KBU60_RS05030 (KBU60_05030) moaA 1073118..1074107 (+) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  KBU60_RS05035 (KBU60_05035) moaB 1074210..1074722 (+) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  KBU60_RS05040 (KBU60_05040) moaC 1074749..1075228 (+) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  KBU60_RS05045 (KBU60_05045) moaD 1075225..1075482 (+) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  KBU60_RS05050 (KBU60_05050) moaE 1075484..1075939 (+) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52173.71 Da        Isoelectric Point: 6.2547

>NTDB_id=557655 KBU60_RS05015 WP_005461534.1 1070108..1071511(+) (luxO) [Vibrio parahaemolyticus strain FB-11]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=557655 KBU60_RS05015 WP_005461534.1 1070108..1071511(+) (luxO) [Vibrio parahaemolyticus strain FB-11]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTTTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCACCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTACCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAGGCGATGCGTCATGGATCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGACGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTATTGCGTAATA
TCGTGGTGCTTAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCATTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
ACAAGCGATTGAGGCGTGTGACGGTAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368