Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   KBU60_RS02965 Genome accession   NZ_CP073068
Coordinates   612247..612861 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FB-11     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 607247..617861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS02955 (KBU60_02955) aceF 608534..610423 (+) 1890 WP_140287833.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  KBU60_RS02960 (KBU60_02960) lpdA 610692..612119 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  KBU60_RS02965 (KBU60_02965) opaR 612247..612861 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  KBU60_RS02970 (KBU60_02970) hpt 613180..613710 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  KBU60_RS02975 (KBU60_02975) can 613786..614454 (-) 669 WP_025789068.1 carbonate dehydratase -
  KBU60_RS02980 (KBU60_02980) - 614738..616408 (+) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  KBU60_RS02985 (KBU60_02985) - 616660..617577 (+) 918 WP_021822368.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=557653 KBU60_RS02965 WP_005479697.1 612247..612861(-) (opaR) [Vibrio parahaemolyticus strain FB-11]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=557653 KBU60_RS02965 WP_005479697.1 612247..612861(-) (opaR) [Vibrio parahaemolyticus strain FB-11]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCACCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701