Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KE627_RS05945 Genome accession   NZ_CP073066
Coordinates   1237137..1237703 (-) Length   188 a.a.
NCBI ID   WP_013726868.1    Uniprot ID   -
Organism   Lentilactobacillus buchneri strain ATCC 4005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1232137..1242703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE627_RS05930 (KE627_05930) - 1233322..1234713 (-) 1392 WP_013726871.1 amino acid permease -
  KE627_RS05935 (KE627_05935) nhaC 1235344..1236759 (+) 1416 WP_013726870.1 Na+/H+ antiporter NhaC -
  KE627_RS05940 (KE627_05940) rpsR 1236861..1237100 (-) 240 WP_013726869.1 30S ribosomal protein S18 -
  KE627_RS05945 (KE627_05945) ssb 1237137..1237703 (-) 567 WP_013726868.1 single-stranded DNA-binding protein Machinery gene
  KE627_RS05950 (KE627_05950) rpsF 1237738..1238034 (-) 297 WP_013726867.1 30S ribosomal protein S6 -
  KE627_RS05955 (KE627_05955) - 1238436..1238627 (+) 192 WP_013726866.1 hypothetical protein -
  KE627_RS05960 (KE627_05960) - 1238833..1239942 (-) 1110 WP_056938679.1 lactate oxidase -
  KE627_RS05965 (KE627_05965) gyrA 1240128..1242695 (-) 2568 WP_041805519.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20304.58 Da        Isoelectric Point: 4.7146

>NTDB_id=557621 KE627_RS05945 WP_013726868.1 1237137..1237703(-) (ssb) [Lentilactobacillus buchneri strain ATCC 4005]
MLNRAVLTGRLTRDVDLRYTQSGTAVGSFSLAVDRQFTNQQGEREADFINCVIWRKSAENFANFVHKGSLVGIDGRIQTR
NYENAQGQRVYVTEVVVENFALLEPRSARNNSNGQQNGNAPQQNNGNANPFDNHSNAGTGNSGNSNNNGGNNPTNNGGNN
GNNGNNNPNDPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=557621 KE627_RS05945 WP_013726868.1 1237137..1237703(-) (ssb) [Lentilactobacillus buchneri strain ATCC 4005]
ATGCTTAATCGTGCAGTTCTTACGGGTCGCCTAACCCGCGATGTTGATTTACGATACACTCAAAGCGGAACCGCTGTCGG
TTCGTTCTCACTTGCCGTTGATCGGCAATTTACCAATCAACAGGGGGAACGAGAGGCTGATTTCATTAACTGCGTAATCT
GGCGTAAATCCGCTGAAAACTTTGCCAACTTCGTTCATAAGGGGTCGCTTGTTGGAATTGATGGCCGTATTCAGACCAGA
AATTACGAAAACGCACAGGGACAACGTGTTTATGTGACCGAAGTTGTAGTAGAGAATTTTGCGCTGCTTGAGCCCCGTTC
TGCAAGGAACAACTCAAATGGTCAGCAAAATGGCAATGCTCCTCAACAAAATAACGGTAATGCCAATCCATTTGATAATC
ATTCAAATGCCGGTACCGGAAATAGTGGCAATTCCAACAATAACGGCGGGAATAATCCGACTAACAATGGTGGAAATAAC
GGTAATAACGGGAACAATAATCCCAATGATCCGTTCGCTAACTCTGGGGACTCGATTGACATTTCCGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.905

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.886

100

0.553