Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L1P13_RS05980 Genome accession   NZ_CP091024
Coordinates   1221256..1221993 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain STEC379     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1216256..1226993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P13_RS05950 yfiL 1216414..1216779 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  L1P13_RS05955 aroF 1216989..1218059 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  L1P13_RS05960 tyrA 1218070..1219191 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  L1P13_RS05965 pheA 1219234..1220394 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  L1P13_RS05970 pheL 1220493..1220540 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  L1P13_RS05975 raiA 1220644..1220985 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L1P13_RS05980 comL 1221256..1221993 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  L1P13_RS05985 rluD 1222128..1223108 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L1P13_RS05990 yfiH 1223105..1223836 (+) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  L1P13_RS05995 clpC 1223966..1226539 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=557619 L1P13_RS05980 WP_000197686.1 1221256..1221993(-) (comL) [Escherichia coli strain STEC379]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=557619 L1P13_RS05980 WP_000197686.1 1221256..1221993(-) (comL) [Escherichia coli strain STEC379]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376