Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L1O93_RS05910 Genome accession   NZ_CP091022
Coordinates   1227586..1228323 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain STEC276     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1222586..1233323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O93_RS05880 yfiL 1222744..1223109 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  L1O93_RS05885 aroF 1223319..1224389 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  L1O93_RS05890 tyrA 1224400..1225521 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  L1O93_RS05895 pheA 1225564..1226724 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  L1O93_RS05900 pheL 1226823..1226870 (-) 48 WP_010723158.1 phe operon leader peptide -
  L1O93_RS05905 raiA 1226974..1227315 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L1O93_RS05910 comL 1227586..1228323 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  L1O93_RS05915 rluD 1228458..1229438 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L1O93_RS05920 yfiH 1229435..1230166 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  L1O93_RS05925 clpC 1230296..1232869 (+) 2574 WP_240992401.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=557539 L1O93_RS05910 WP_000197686.1 1227586..1228323(-) (comL) [Escherichia coli strain STEC276]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=557539 L1O93_RS05910 WP_000197686.1 1227586..1228323(-) (comL) [Escherichia coli strain STEC276]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376