Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   J7D36_RS01730 Genome accession   NZ_CP073060
Coordinates   364426..364899 (+) Length   157 a.a.
NCBI ID   WP_021510149.1    Uniprot ID   A0AAV3K4J8
Organism   Acinetobacter baumannii strain DETAB-P39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359426..369899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D36_RS01705 (J7D36_01705) - 359889..361994 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  J7D36_RS01710 (J7D36_01710) - 362034..362164 (-) 131 Protein_328 hypothetical protein -
  J7D36_RS01715 (J7D36_01715) rpoZ 362203..362481 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  J7D36_RS01720 (J7D36_01720) gmk 362554..363183 (-) 630 WP_000015937.1 guanylate kinase -
  J7D36_RS01725 (J7D36_01725) ispH 363306..364256 (+) 951 WP_021510150.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  J7D36_RS01730 (J7D36_01730) fimU 364426..364899 (+) 474 WP_021510149.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J7D36_RS01735 (J7D36_01735) pilV 364893..365453 (+) 561 WP_086374083.1 type IV pilus modification protein PilV Machinery gene
  J7D36_RS01740 (J7D36_01740) pilW 365454..366455 (+) 1002 WP_021510147.1 PilW family protein Machinery gene
  J7D36_RS01745 (J7D36_01745) pilX 366452..367270 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  J7D36_RS19005 - 367282..367476 (+) 195 Protein_336 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16867.52 Da        Isoelectric Point: 8.5355

>NTDB_id=557497 J7D36_RS01730 WP_021510149.1 364426..364899(+) (fimU) [Acinetobacter baumannii strain DETAB-P39]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGMQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=557497 J7D36_RS01730 WP_021510149.1 364426..364899(+) (fimU) [Acinetobacter baumannii strain DETAB-P39]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTATGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994