Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KBZ93_RS08845 Genome accession   NZ_CP073017
Coordinates   1868748..1871090 (+) Length   780 a.a.
NCBI ID   WP_020862340.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1863748..1876090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBZ93_RS08820 (KBZ93_08830) - 1864327..1865091 (+) 765 WP_010872895.1 iron uptake porin -
  KBZ93_RS08825 (KBZ93_08835) - 1865121..1865561 (+) 441 WP_010872896.1 hypothetical protein -
  KBZ93_RS08830 (KBZ93_08840) pilM 1865746..1866849 (+) 1104 WP_010872897.1 type IV pilus biogenesis protein PilM Machinery gene
  KBZ93_RS08835 (KBZ93_08845) pilN 1866931..1867785 (+) 855 WP_010872898.1 PilN domain-containing protein Machinery gene
  KBZ93_RS08840 (KBZ93_08850) pilO 1867825..1868652 (+) 828 WP_010872899.1 pilus assembly protein Machinery gene
  KBZ93_RS08845 (KBZ93_08855) pilQ 1868748..1871090 (+) 2343 WP_020862340.1 type IV pilus secretin PilQ Machinery gene
  KBZ93_RS08850 (KBZ93_08860) - 1871099..1871923 (-) 825 WP_010872901.1 FkbM family methyltransferase -
  KBZ93_RS08855 (KBZ93_08865) - 1871943..1872677 (-) 735 WP_010872902.1 FkbM family methyltransferase -
  KBZ93_RS08860 (KBZ93_08870) tilS 1872744..1873736 (+) 993 WP_010872903.1 tRNA lysidine(34) synthetase TilS -
  KBZ93_RS08865 (KBZ93_08875) thrC 1873786..1874934 (-) 1149 WP_010872904.1 threonine synthase -
  KBZ93_RS08870 (KBZ93_08880) ndhC 1875217..1875579 (+) 363 WP_010872905.1 photosynthetic/respiratory NAD(P)H-quinone oxidoreductase subunit C -

Sequence

Protein


Download         Length: 780 a.a.        Molecular weight: 84098.34 Da        Isoelectric Point: 4.3538

>NTDB_id=557385 KBZ93_RS08845 WP_020862340.1 1868748..1871090(+) (pilQ) [Synechocystis sp. PCC 6803]
MKNFRFWLTTEIATCCLLALAPAQAETVSQSNTLDGDLRTAIAGDSSRDWLQFEKSLEQSLKQKEEIDSWKPSLELMQAK
SLVKPGQKLTNIELLVQELEALSDPLALNFPEPNQTSVAQMAPPSRPMPPPPAGSGQVMFPNPEIIIQQQGGVPQRGASP
QVGNPSILSPAVPVAPVRSRAVPPPVGDLAISNINASFDMIDLGQRGQVNVPSLVLREAPAREVLAVLTRYAGMNLIFTD
NQNNEGTPTPGTPPGGQVAPPQAQSTITLDIQNESVQDVFNYVLMASGLKASRRGNTIFAGANLLPSARNIITRTIRLNQ
ASAESVASTLASQGAEVNILFEGQEDVQLAENAPPRVIKQPPTLVPLTVQKPANDSSVLILEGLVVSTDPRLNTVTLVGE
PRNVELASSMITQMDARRRQVAVNVKIIDINLNNIQDYDSSFSFGIGDSFFVQDSGSAVMRFGDTAPVQEIDINNNLGRI
TNPPAIVNPFQDGEIFFDLNRITNIEVPLGPGTIPINFFTSGSGAVSNNPLFNGVTEFPIVEVDEQGLLTITQPEFGLPS
FYQYPKKFQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQGDTAVRTITPVLEDVGLTLNVIVD
RIDDNGFITLRVNPIVASPAGTQVFDSGAGAINEITLINKRELTSGVVRLRDDQTFILSGIISELQRSTTSKVPILGDLP
VIGALFRQSTDTTDRSEVIILMTPKIIHDSTEAQFGFRYNPDAATAEFLRQKGFPVQAQP

Nucleotide


Download         Length: 2343 bp        

>NTDB_id=557385 KBZ93_RS08845 WP_020862340.1 1868748..1871090(+) (pilQ) [Synechocystis sp. PCC 6803]
GTGAAAAATTTTCGGTTTTGGTTAACAACGGAAATAGCGACCTGTTGCTTGTTGGCCCTAGCGCCTGCCCAGGCAGAAAC
GGTTTCCCAGTCAAATACTTTGGATGGAGATTTGCGGACGGCGATCGCCGGTGACTCAAGTCGAGATTGGCTACAGTTTG
AAAAGAGTTTGGAGCAGTCTCTCAAGCAAAAAGAAGAAATTGATTCTTGGAAACCATCATTGGAGTTGATGCAGGCTAAA
TCCCTTGTCAAACCAGGGCAAAAGTTGACGAATATTGAGTTGCTGGTGCAGGAGTTGGAAGCCTTATCCGACCCACTGGC
ATTAAATTTTCCAGAACCGAACCAGACCAGTGTTGCTCAAATGGCTCCCCCCAGCCGCCCTATGCCTCCCCCTCCAGCGG
GCAGTGGGCAGGTCATGTTTCCCAATCCCGAAATAATCATCCAACAGCAGGGTGGTGTGCCCCAACGTGGTGCCAGCCCT
CAGGTGGGAAATCCTAGCATTTTATCTCCTGCGGTACCTGTGGCTCCGGTACGTTCCCGGGCTGTGCCGCCACCAGTGGG
GGATTTGGCCATTTCCAACATCAATGCTTCCTTCGACATGATTGATCTTGGCCAAAGGGGTCAGGTTAACGTACCAAGCT
TGGTACTACGGGAGGCCCCAGCAAGGGAAGTTTTGGCTGTGCTAACCCGTTATGCTGGCATGAATCTAATTTTTACCGAT
AACCAAAACAATGAAGGCACTCCTACCCCAGGTACACCTCCCGGTGGTCAGGTTGCTCCTCCCCAAGCTCAGTCAACCAT
TACTCTGGACATTCAAAATGAAAGTGTTCAGGACGTTTTTAACTACGTTCTGATGGCCTCAGGGCTAAAAGCTAGTCGTC
GGGGTAACACAATTTTCGCTGGGGCTAATCTTTTGCCTTCGGCTCGAAATATTATTACCCGCACTATCCGGTTGAACCAG
GCTAGTGCTGAGTCTGTGGCCAGTACTTTGGCTTCTCAGGGTGCGGAAGTTAACATCCTATTTGAAGGTCAGGAAGATGT
TCAGTTGGCAGAAAATGCGCCGCCAAGGGTAATTAAGCAGCCTCCTACTCTAGTTCCCTTAACTGTTCAAAAACCAGCCA
ACGATTCTTCAGTTTTAATTCTGGAAGGGCTAGTGGTTAGCACTGATCCCCGTTTAAACACTGTAACCCTGGTGGGTGAA
CCCCGTAATGTGGAATTGGCTAGTTCCATGATTACTCAAATGGATGCTCGCCGCCGCCAAGTGGCAGTAAACGTCAAAAT
TATTGACATCAATCTTAATAATATTCAAGATTATGACAGCAGTTTTTCCTTTGGCATAGGAGATAGTTTCTTTGTCCAAG
ACAGTGGTTCTGCGGTCATGCGCTTTGGTGACACGGCTCCAGTTCAGGAAATTGATATCAACAATAACCTGGGGCGAATC
ACTAATCCACCTGCCATTGTTAATCCTTTTCAAGACGGAGAGATTTTCTTTGATCTTAATAGAATAACTAACATTGAAGT
GCCTCTTGGCCCAGGGACCATCCCCATAAATTTCTTCACATCAGGTTCTGGAGCCGTTTCCAACAATCCATTGTTTAATG
GAGTTACTGAATTTCCAATTGTGGAGGTAGATGAACAAGGTCTGTTAACAATCACCCAACCTGAGTTTGGTTTGCCATCT
TTTTATCAATATCCTAAAAAGTTTCAGGCACAAATTGACGCTCAAATACGTAGTGGGAATGCGAAAATTCTCACCGATCC
AACTTTGATTGTTCAAGAAGGCGAGGCTGCTCAAGTTAAGTTAACAGAATCTGTTATTGCCAGCGTTGATACGCAAGTTG
ATACCCAGGGAGATACAGCAGTTAGAACTATTACGCCGGTTCTGGAAGATGTTGGATTAACACTAAATGTCATAGTTGAT
CGAATTGATGACAATGGCTTTATTACTTTGCGCGTTAATCCAATCGTTGCATCTCCTGCTGGAACACAAGTATTTGATAG
TGGTGCTGGCGCCATCAACGAAATAACACTGATAAACAAAAGGGAACTTACTTCCGGTGTAGTTCGGCTGAGGGATGATC
AGACATTCATTCTATCTGGCATTATTTCGGAACTTCAACGTTCTACCACAAGTAAAGTTCCAATTCTAGGGGATTTACCG
GTGATTGGAGCATTGTTTAGGCAGTCCACAGACACAACAGACCGTTCGGAAGTTATTATTCTCATGACCCCCAAGATCAT
TCATGATAGTACAGAGGCGCAGTTTGGCTTCCGTTACAATCCTGACGCGGCTACGGCGGAATTCCTGCGGCAGAAAGGAT
TTCCCGTTCAGGCTCAGCCATAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(576-748)

Bacterial type II/III secretion system short domain (Secretin_N)

(313-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Synechocystis sp. PCC 6803

100

100

1