Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KBZ93_RS08840 Genome accession   NZ_CP073017
Coordinates   1867825..1868652 (+) Length   275 a.a.
NCBI ID   WP_010872899.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1862825..1873652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBZ93_RS08815 (KBZ93_08825) - 1863335..1864075 (+) 741 WP_010872894.1 WecB/TagA/CpsF family glycosyltransferase -
  KBZ93_RS08820 (KBZ93_08830) - 1864327..1865091 (+) 765 WP_010872895.1 iron uptake porin -
  KBZ93_RS08825 (KBZ93_08835) - 1865121..1865561 (+) 441 WP_010872896.1 hypothetical protein -
  KBZ93_RS08830 (KBZ93_08840) pilM 1865746..1866849 (+) 1104 WP_010872897.1 type IV pilus biogenesis protein PilM Machinery gene
  KBZ93_RS08835 (KBZ93_08845) pilN 1866931..1867785 (+) 855 WP_010872898.1 PilN domain-containing protein Machinery gene
  KBZ93_RS08840 (KBZ93_08850) pilO 1867825..1868652 (+) 828 WP_010872899.1 pilus assembly protein Machinery gene
  KBZ93_RS08845 (KBZ93_08855) pilQ 1868748..1871090 (+) 2343 WP_020862340.1 type IV pilus secretin PilQ Machinery gene
  KBZ93_RS08850 (KBZ93_08860) - 1871099..1871923 (-) 825 WP_010872901.1 FkbM family methyltransferase -
  KBZ93_RS08855 (KBZ93_08865) - 1871943..1872677 (-) 735 WP_010872902.1 FkbM family methyltransferase -

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 30066.97 Da        Isoelectric Point: 3.9599

>NTDB_id=557384 KBZ93_RS08840 WP_010872899.1 1867825..1868652(+) (pilO) [Synechocystis sp. PCC 6803]
MTSYSEEYSSTTTIIDEEFDAGGNYPTAFGITFTPQVSGISLGILGLLAMGYVLLNFVMPALGEYQQLRQDEEAKQAQVD
QQSPEVLMRRLANAEVQLQEAQQRKATVLELYANSEDLNTILYNFNTLFVNRNVKLVSFLPQGDPVVISDDSLGANAKNQ
LKRQTYTISMTGGFSETLALIRDIERLQPLILMKNLRTSLVNPEFPVNVVRDGDTVQVQTDAPDILTTDLTLEVFMPLTP
EEIAALTPPPPPPGQEGQPPAEGQPPAEGQAAPAP

Nucleotide


Download         Length: 828 bp        

>NTDB_id=557384 KBZ93_RS08840 WP_010872899.1 1867825..1868652(+) (pilO) [Synechocystis sp. PCC 6803]
ATGACCAGCTACAGCGAAGAGTATTCATCAACGACAACAATTATTGATGAGGAATTTGATGCGGGAGGAAATTATCCAAC
TGCATTTGGGATAACCTTCACCCCCCAGGTAAGTGGCATTAGTTTAGGTATTCTTGGCTTGCTGGCCATGGGTTATGTTC
TGCTCAATTTTGTCATGCCAGCTTTGGGAGAATATCAACAACTAAGACAGGACGAAGAAGCTAAACAAGCTCAAGTGGAT
CAGCAGTCCCCGGAAGTGTTGATGCGTCGGCTAGCCAATGCGGAGGTGCAGTTACAGGAAGCTCAACAGCGTAAAGCGAC
AGTGTTGGAACTCTACGCCAATAGCGAGGACTTGAACACAATCCTCTATAACTTCAATACTCTATTCGTAAATAGAAACG
TGAAGTTAGTCAGCTTTTTGCCCCAGGGAGATCCGGTGGTAATCTCCGATGATAGTCTGGGGGCAAACGCAAAAAATCAG
CTTAAACGACAAACTTATACCATTTCCATGACGGGCGGTTTTAGTGAAACCCTGGCATTAATTCGGGATATTGAACGGCT
GCAACCGTTAATTTTGATGAAAAATTTGCGGACTAGCTTGGTTAATCCAGAATTTCCAGTCAATGTGGTTAGGGATGGTG
ACACTGTACAAGTGCAAACTGATGCGCCAGATATCCTAACTACGGATTTAACGTTGGAGGTGTTTATGCCATTAACCCCT
GAGGAGATTGCCGCCCTGACTCCTCCCCCGCCGCCGCCTGGACAGGAGGGTCAACCACCGGCTGAGGGACAACCTCCAGC
GGAAGGACAAGCGGCCCCGGCCCCCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Synechocystis sp. PCC 6803

100

100

1