Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L1O94_RS06670 Genome accession   NZ_CP091018
Coordinates   1341887..1342624 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain STEC307     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1336887..1347624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O94_RS06640 yfiL 1337045..1337410 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  L1O94_RS06645 aroF 1337620..1338690 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  L1O94_RS06650 tyrA 1338701..1339822 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  L1O94_RS06655 pheA 1339865..1341025 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  L1O94_RS06660 pheL 1341124..1341171 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  L1O94_RS06665 raiA 1341275..1341616 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L1O94_RS06670 comL 1341887..1342624 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  L1O94_RS06675 rluD 1342759..1343739 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L1O94_RS06680 yfiH 1343736..1344467 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  L1O94_RS06685 clpC 1344597..1347170 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=557375 L1O94_RS06670 WP_000197686.1 1341887..1342624(-) (comL) [Escherichia coli strain STEC307]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=557375 L1O94_RS06670 WP_000197686.1 1341887..1342624(-) (comL) [Escherichia coli strain STEC307]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376