Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KAJ74_RS10960 Genome accession   NZ_CP073012
Coordinates   2263266..2263661 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA14+     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2258266..2268661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAJ74_RS10930 (KAJ74_10930) - 2259524..2259928 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  KAJ74_RS10935 (KAJ74_10935) - 2260266..2260358 (+) 93 WP_001790611.1 hypothetical protein -
  KAJ74_RS10940 (KAJ74_10940) - 2260490..2260723 (+) 234 WP_000384523.1 DUF1146 family protein -
  KAJ74_RS10945 (KAJ74_10945) murA 2260834..2262099 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KAJ74_RS10950 (KAJ74_10950) fabZ 2262133..2262573 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KAJ74_RS10955 (KAJ74_10955) - 2262632..2263072 (-) 441 WP_000846746.1 YwpF-like family protein -
  KAJ74_RS10960 (KAJ74_10960) ssb 2263266..2263661 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  KAJ74_RS10965 (KAJ74_10965) sceD 2264049..2264744 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  KAJ74_RS10970 (KAJ74_10970) tenA 2265268..2265957 (+) 690 WP_000396077.1 thiaminase II -
  KAJ74_RS10975 (KAJ74_10975) thiD 2265950..2266780 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KAJ74_RS10980 (KAJ74_10980) thiM 2266764..2267564 (+) 801 WP_031590212.1 hydroxyethylthiazole kinase -
  KAJ74_RS10985 (KAJ74_10985) thiE 2267557..2268198 (+) 642 WP_000483155.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=557336 KAJ74_RS10960 WP_000932694.1 2263266..2263661(+) (ssb) [Staphylococcus aureus strain SA14+]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=557336 KAJ74_RS10960 WP_000932694.1 2263266..2263661(+) (ssb) [Staphylococcus aureus strain SA14+]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992