Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KBP50_RS08180 Genome accession   NZ_CP073011
Coordinates   1726444..1728168 (+) Length   574 a.a.
NCBI ID   WP_050353031.1    Uniprot ID   -
Organism   Virgibacillus pantothenticus strain DSM 26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1721444..1733168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP50_RS08155 (KBP50_08155) - 1722699..1722929 (+) 231 WP_050353035.1 exodeoxyribonuclease VII small subunit -
  KBP50_RS08160 (KBP50_08160) - 1722932..1723816 (+) 885 WP_128743495.1 polyprenyl synthetase family protein -
  KBP50_RS08165 (KBP50_08165) - 1724512..1725090 (+) 579 WP_050353034.1 hypothetical protein -
  KBP50_RS08170 (KBP50_08170) - 1725109..1725939 (+) 831 WP_050353033.1 TlyA family RNA methyltransferase -
  KBP50_RS08175 (KBP50_08175) argR 1725970..1726419 (+) 450 WP_050353032.1 transcriptional regulator ArgR -
  KBP50_RS08180 (KBP50_08180) recN 1726444..1728168 (+) 1725 WP_050353031.1 DNA repair protein RecN Machinery gene
  KBP50_RS08185 (KBP50_08185) spoIVB 1728708..1729922 (+) 1215 WP_050353030.1 SpoIVB peptidase -
  KBP50_RS08190 (KBP50_08190) spo0A 1730253..1731029 (+) 777 WP_050353029.1 sporulation transcription factor Spo0A -
  KBP50_RS08195 (KBP50_08195) - 1731141..1732490 (-) 1350 WP_050353028.1 aspartate kinase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 65540.27 Da        Isoelectric Point: 5.0424

>NTDB_id=557294 KBP50_RS08180 WP_050353031.1 1726444..1728168(+) (recN) [Virgibacillus pantothenticus strain DSM 26]
MLTELSIQDFAIINKLSITFHEGLTVLTGETGAGKSIIIDAVQLLAGGRGSVEFVRHGAKKADIEGLFIIEDESHPVYNV
CQQYGIECQDHQLVLRRTMTANGKSICRVNSKLVTLAILREFGKTLIDIHSQHETQSLMDPEQHIELLDLYQPELMNKAK
DEYFKLYDQLSNLKNRYRKLSENEQETAQRLDLLQFQLRELEQAQLQPNEDEQLEEERNTLANYERIYSALQLAYNSLYG
EQKGLDWVNQAQIALQDNSKFDSSIAEKAEEIANYYFGLEELTYDLGNLIESLQYNPERLNEIEARLSEINRLKKKYGPS
VSEMLTYMAKIEEEIEQINNKDSHLSKLEEQIKEKAKDAFLEAQELHDIRQAAAKALTKEIHEELKDLYLDKAQFKVDFA
KNKLDQREELDKHLHKNGLDHVTFLISTNPGEPLKPLNKVASGGELSRIMLSLKKIFAKHQGVTSVIFDEVDTGVSGRVA
QAIAEKIYHISQESQVLCITHLPQVAAMADTHKLIEKEVTDHRTSTSVHELTPELQINELARMITGTKLTETAVDHGREM
LEMAIQFKSKEHNL

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=557294 KBP50_RS08180 WP_050353031.1 1726444..1728168(+) (recN) [Virgibacillus pantothenticus strain DSM 26]
GTGCTTACGGAATTATCAATTCAGGATTTTGCGATTATAAACAAGCTTTCCATCACTTTTCACGAAGGTTTAACGGTATT
GACAGGTGAAACTGGTGCAGGGAAATCGATTATTATCGATGCGGTTCAATTGCTCGCAGGAGGAAGAGGCTCCGTTGAAT
TTGTTCGGCACGGTGCCAAGAAAGCAGATATTGAAGGGTTGTTTATTATCGAGGATGAGTCGCATCCAGTTTATAACGTT
TGCCAACAGTACGGTATCGAATGTCAAGATCATCAGCTTGTGCTAAGACGAACAATGACTGCAAATGGGAAAAGTATTTG
CCGTGTGAATAGCAAATTAGTGACGTTAGCCATTCTCCGTGAATTTGGAAAAACATTAATTGACATCCATAGCCAGCACG
AGACACAATCACTAATGGATCCAGAGCAGCATATTGAGTTGTTAGATTTATATCAGCCCGAATTAATGAACAAGGCTAAA
GACGAATACTTTAAACTATACGATCAGTTATCCAATTTGAAAAATCGTTATCGGAAATTAAGTGAAAACGAGCAAGAGAC
AGCGCAACGATTAGACCTGCTACAATTTCAATTACGAGAACTGGAACAAGCTCAACTGCAACCAAATGAGGACGAACAGC
TGGAAGAAGAAAGGAATACCTTGGCAAATTATGAACGAATTTATTCAGCCTTGCAACTAGCCTATAATTCCCTTTATGGG
GAACAAAAAGGTCTTGATTGGGTTAACCAAGCTCAAATTGCCTTGCAGGATAACAGTAAGTTCGATTCCTCGATTGCAGA
AAAAGCCGAAGAGATAGCCAATTATTATTTCGGTTTAGAGGAGCTTACTTATGATTTGGGAAATCTAATTGAATCGTTAC
AATATAACCCCGAGCGTTTAAATGAGATTGAAGCTCGCCTAAGCGAAATCAATCGACTAAAGAAAAAGTATGGTCCTTCG
GTGTCTGAAATGCTGACATATATGGCAAAAATTGAAGAAGAAATCGAGCAAATTAACAATAAAGATTCTCACTTATCGAA
GCTAGAAGAACAAATCAAAGAAAAAGCGAAAGATGCTTTTTTGGAAGCTCAGGAGTTGCATGACATACGTCAAGCAGCTG
CAAAGGCTTTAACGAAAGAAATTCATGAGGAGTTAAAGGATCTTTATTTAGATAAGGCTCAATTTAAAGTTGATTTTGCG
AAAAATAAGCTGGATCAACGAGAAGAATTGGATAAGCACTTGCATAAAAATGGATTGGATCATGTAACCTTTTTGATCTC
TACAAATCCAGGCGAGCCTCTAAAGCCATTAAATAAAGTTGCTTCTGGAGGAGAACTGTCACGGATTATGTTGAGCTTAA
AAAAAATATTTGCCAAACATCAAGGAGTCACAAGTGTAATTTTTGATGAAGTTGATACTGGTGTTAGTGGACGTGTAGCA
CAAGCAATTGCGGAGAAAATATATCACATTTCTCAGGAGTCACAGGTTTTATGTATTACTCATCTTCCACAAGTAGCTGC
AATGGCTGATACCCATAAACTAATTGAAAAAGAAGTGACGGATCATCGAACATCTACCAGTGTTCATGAATTAACTCCGG
AACTGCAGATAAATGAACTAGCTCGTATGATTACGGGAACGAAGCTTACGGAAACAGCAGTGGATCATGGTCGGGAAATG
TTAGAAATGGCAATCCAATTTAAATCAAAAGAGCATAATTTATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.87

100

0.53