Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KBQ49_RS11325 Genome accession   NZ_CP072988
Coordinates   2590365..2591753 (+) Length   462 a.a.
NCBI ID   WP_003477091.1    Uniprot ID   A0A1C3TL96
Organism   Xanthomonas translucens pv. translucens strain CIX43     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2585365..2596753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBQ49_RS11300 - 2585453..2585845 (-) 393 WP_065898879.1 hypothetical protein -
  KBQ49_RS11305 (KBQ49_11245) - 2585864..2586205 (-) 342 WP_155759090.1 hypothetical protein -
  KBQ49_RS11310 (KBQ49_11250) sucD 2586377..2587249 (-) 873 WP_003466372.1 succinate--CoA ligase subunit alpha -
  KBQ49_RS11315 (KBQ49_11255) sucC 2587273..2588436 (-) 1164 WP_003466374.1 ADP-forming succinate--CoA ligase subunit beta -
  KBQ49_RS11320 (KBQ49_11260) - 2588677..2590290 (+) 1614 WP_206709582.1 ATP-binding protein -
  KBQ49_RS11325 (KBQ49_11265) pilR 2590365..2591753 (+) 1389 WP_003477091.1 sigma-54 dependent transcriptional regulator Regulator
  KBQ49_RS11330 (KBQ49_11270) - 2591918..2592213 (+) 296 Protein_2228 type II toxin-antitoxin system RelE/ParE family toxin -
  KBQ49_RS11335 (KBQ49_11275) - 2592216..2592509 (+) 294 WP_009580422.1 addiction module antidote protein -
  KBQ49_RS11340 (KBQ49_11280) pilB 2592537..2594273 (-) 1737 WP_058363696.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KBQ49_RS11345 (KBQ49_11285) - 2594401..2595366 (-) 966 WP_065898826.1 IS1595 family transposase -
  KBQ49_RS11350 - 2595625..2595837 (+) 213 WP_230939645.1 hypothetical protein -
  KBQ49_RS11355 (KBQ49_11295) - 2596082..2596516 (-) 435 WP_081045858.1 pilin -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49799.21 Da        Isoelectric Point: 6.5828

>NTDB_id=557171 KBQ49_RS11325 WP_003477091.1 2590365..2591753(+) (pilR) [Xanthomonas translucens pv. translucens strain CIX43]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEATPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=557171 KBQ49_RS11325 WP_003477091.1 2590365..2591753(+) (pilR) [Xanthomonas translucens pv. translucens strain CIX43]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTAGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGTGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTTGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAGCTGGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAATTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGATCGAGGTGCCCACCGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCACGCCCGCA
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGAATGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3TL96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.527

99.351

0.621
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472