Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KBW87_RS00040 Genome accession   NZ_CP072983
Coordinates   9216..9731 (+) Length   171 a.a.
NCBI ID   WP_004039881.1    Uniprot ID   A0A4S2BNR5
Organism   Lactobacillus intestinalis strain DSM 6629     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4216..14731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBW87_RS00025 (KBW87_00025) gyrB 4236..6200 (+) 1965 WP_057809108.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  KBW87_RS00030 (KBW87_00030) gyrA 6211..8682 (+) 2472 WP_057809110.1 DNA gyrase subunit A -
  KBW87_RS00035 (KBW87_00035) rpsF 8877..9173 (+) 297 WP_004039882.1 30S ribosomal protein S6 -
  KBW87_RS00040 (KBW87_00040) ssb 9216..9731 (+) 516 WP_004039881.1 single-stranded DNA-binding protein Machinery gene
  KBW87_RS00045 (KBW87_00045) rpsR 9762..9998 (+) 237 WP_004039880.1 30S ribosomal protein S18 -
  KBW87_RS00050 (KBW87_00050) - 10146..12167 (+) 2022 WP_255807090.1 DHH family phosphoesterase -
  KBW87_RS00055 (KBW87_00055) rplI 12180..12635 (+) 456 WP_057809114.1 50S ribosomal protein L9 -
  KBW87_RS00060 (KBW87_00060) dnaB 12660..14042 (+) 1383 WP_057809115.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18816.51 Da        Isoelectric Point: 4.9987

>NTDB_id=557124 KBW87_RS00040 WP_004039881.1 9216..9731(+) (ssb) [Lactobacillus intestinalis strain DSM 6629]
MINRVVLTGRLTRDPELRTTGSGISVATFTLAVDRQYTNARGEREADFISCVIWRKSAENFVNFTSKGSLVGIDGRLQSR
SYDDKDGKRVYVTEVVVDSFALLESRRDRENRGQNGGYTPTSGNAGTQNTNNFQNNDRPSQPNTNSSAPKPQDPFSGSGD
AIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=557124 KBW87_RS00040 WP_004039881.1 9216..9731(+) (ssb) [Lactobacillus intestinalis strain DSM 6629]
ATGATTAATAGAGTTGTACTTACCGGACGTTTAACGCGTGATCCTGAATTGCGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGATCGTCAATATACAAATGCTCGAGGCGAGAGAGAAGCGGATTTTATTAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTTGTTAACTTCACTTCAAAGGGATCGCTAGTAGGAATTGATGGCCGACTTCAATCCAGA
AGTTATGATGATAAAGATGGGAAACGAGTATATGTAACTGAAGTTGTAGTAGATAGCTTCGCATTACTCGAATCCCGTAG
AGATCGTGAAAATCGCGGTCAAAACGGCGGTTACACACCAACTAGCGGAAATGCTGGCACTCAAAATACTAACAATTTCC
AAAATAATGATAGACCTTCTCAACCAAATACCAATAGTTCAGCTCCTAAGCCACAGGATCCATTTTCTGGCTCAGGGGAT
GCAATTGATATTTCGGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S2BNR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.659

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.542

100

0.544