Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   J9870_RS21000 Genome accession   NZ_CP072913
Coordinates   4878247..4880493 (-) Length   748 a.a.
NCBI ID   WP_210639829.1    Uniprot ID   -
Organism   Pseudomonas sp. Tri1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4873247..4885493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9870_RS20965 murB 4873631..4874650 (-) 1020 WP_210639823.1 UDP-N-acetylmuramate dehydrogenase -
  J9870_RS20970 - 4874647..4875111 (-) 465 WP_210639824.1 low molecular weight protein-tyrosine-phosphatase -
  J9870_RS20975 kdsB 4875111..4875875 (-) 765 WP_210639825.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J9870_RS20980 - 4875872..4876057 (-) 186 WP_003179363.1 Trm112 family protein -
  J9870_RS20985 lpxK 4876080..4877090 (-) 1011 WP_210639826.1 tetraacyldisaccharide 4'-kinase -
  J9870_RS20990 - 4877090..4877518 (-) 429 WP_210639827.1 biopolymer transporter ExbD -
  J9870_RS20995 exbB 4877515..4878150 (-) 636 WP_210639828.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  J9870_RS21000 comA 4878247..4880493 (-) 2247 WP_210639829.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J9870_RS21005 - 4880639..4881154 (+) 516 WP_210639830.1 DUF2062 domain-containing protein -
  J9870_RS21010 - 4881242..4882021 (-) 780 WP_210639831.1 ABC transporter permease -
  J9870_RS21015 - 4882018..4882950 (-) 933 WP_135846488.1 ABC transporter ATP-binding protein -
  J9870_RS21020 - 4883081..4883704 (-) 624 WP_210639832.1 glutathione S-transferase -
  J9870_RS21025 - 4883749..4884408 (-) 660 WP_210639833.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81054.01 Da        Isoelectric Point: 9.6768

>NTDB_id=556817 J9870_RS21000 WP_210639829.1 4878247..4880493(-) (comA) [Pseudomonas sp. Tri1]
MRTGLAALAVGLLAPVFLPALPPPWLIAAMPVLGLMVVPFRIYPLGFFLFGLAWACLSAQLALDERLPAALDGETRWVEG
RVVGLPQYGEGAVRFELADAHSRRTPLPSSMRLAWFGGPPVSSGERWRLAVKLKRPSGLLNPDGFDYEAWLLSRGIGATG
TVKDGRRLRAAQGAWRDGVRQALAQVDAQGRSGALAALVLGDGSGLSRDDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGVWPVRLPWLPWACALAFTAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKHPDPWWAWLLAFAGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVAVGLCPLLLLLGLPVSLSGPLVNLLAVPWISLLVLPLAL
LGTALLPVPFMGEGLLWVAGGLLDLMFKGLALAAGRMPAWIPVSVPLWAWCIAALGAFLLLLPKGVPLRVLGWPMLLLLV
FPPRESVPQGHAEIWHLDVGQGLAVLVRTRRHTLLYDAGPRFGEADAGERVVLPTLRKLGVPALDLMLLSHADADHAGGA
RAVHNGLATTRVISGDPGALPDELQAGTCDSGERWEWDGVSFELWQWSAALESNQKSCVLLVEAGGERLLLTGDIDSQAE
RALLDGPLALPIQWLAAPHHGSRSSSSMTLLSRLKPHSVLISRGQGNAFGHPHPRVIARYRRLGMAIYDSAEQGAIRLQL
GAFEPPFTQAGQRRYWRDPPSAGLRTEH

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=556817 J9870_RS21000 WP_210639829.1 4878247..4880493(-) (comA) [Pseudomonas sp. Tri1]
ATGCGCACAGGGTTGGCCGCGCTTGCAGTGGGGTTGTTGGCCCCGGTTTTTCTACCGGCCTTGCCGCCGCCGTGGCTTAT
TGCAGCCATGCCGGTGCTGGGGCTGATGGTTGTGCCGTTTCGAATTTACCCGCTCGGTTTTTTCCTGTTCGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGCTTGCGCTGGACGAGCGGTTGCCTGCCGCGCTGGACGGCGAAACCCGTTGGGTGGAAGGG
CGCGTCGTTGGCTTGCCGCAGTACGGCGAGGGGGCGGTGCGATTCGAACTGGCCGATGCCCATTCACGCCGCACGCCACT
ACCGTCGTCGATGCGCCTGGCCTGGTTCGGTGGGCCGCCTGTCAGCAGTGGCGAGCGCTGGCGATTGGCTGTGAAGCTCA
AACGGCCCTCCGGGTTGCTGAACCCAGACGGTTTCGACTATGAAGCCTGGCTGTTGAGTCGAGGCATCGGGGCGACCGGT
ACGGTAAAGGATGGCCGTCGCCTGCGTGCGGCCCAGGGGGCGTGGCGCGACGGCGTACGACAGGCTCTGGCCCAAGTGGA
TGCCCAGGGGCGCTCCGGGGCGCTGGCGGCCTTGGTGCTTGGGGACGGAAGTGGGCTGAGCCGCGATGACTGGCAGGTGT
TGCAAGATACCGGCACCGTTCATTTACTGGTGATATCCGGGCAGCACATCGGGCTGCTCGCCGGCCTGGTGTACCTGCTG
GTAGCCGGTGCGGCGCGCTATGGCGTGTGGCCGGTGCGTCTGCCGTGGTTGCCCTGGGCCTGCGCGCTGGCCTTCACCGC
AGCGTTGGGCTACGGCCTGCTCGCTGGGTTCGAGGTGCCAGTGCGGCGGGCTTGCGCGATGATCGGCCTGGTGCTGCTCT
GGCGCTTGCGCTTCAAGCATCCGGACCCCTGGTGGGCATGGCTGCTGGCCTTCGCCGGAGTACTGGTGTTCGATCCGCTG
GCCAGCTTGCGGCCGGGGTTCTGGTTATCGTTTGCGGCGGTGGCGATCTTGATGTTCACCTTTGGCGCTCGCCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGGTGGCGGTCGGCTTGTGTCCGTTGTTGTTGCTATTGGGCT
TGCCGGTCAGTCTCAGTGGGCCACTGGTGAACCTGCTGGCGGTGCCCTGGATCAGCCTGTTGGTGTTGCCGTTGGCACTG
CTCGGCACGGCGTTGTTGCCCGTGCCGTTCATGGGTGAAGGGTTGCTGTGGGTGGCCGGTGGCTTGCTCGATCTGATGTT
CAAGGGGCTGGCGCTGGCTGCCGGGCGAATGCCGGCGTGGATACCTGTTTCGGTCCCGCTCTGGGCCTGGTGCATCGCCG
CTCTCGGGGCTTTTTTGCTGTTGCTGCCCAAGGGCGTACCGCTGCGGGTGCTGGGGTGGCCGATGCTGCTGTTGCTGGTT
TTTCCGCCGCGAGAAAGCGTGCCGCAAGGCCATGCCGAAATCTGGCATCTGGACGTTGGCCAAGGGCTTGCGGTGCTTGT
GCGCACCCGTCGTCATACCCTGCTCTACGATGCGGGGCCGCGCTTTGGCGAGGCCGACGCGGGCGAGCGCGTCGTGCTGC
CGACGTTGCGTAAGCTGGGGGTGCCGGCATTGGATCTGATGCTGCTCAGCCATGCTGACGCCGATCACGCCGGTGGAGCC
CGCGCTGTGCACAACGGCCTGGCAACGACGCGGGTGATCAGTGGCGATCCGGGCGCGCTACCTGATGAGCTGCAGGCCGG
CACATGCGATAGCGGCGAGCGTTGGGAGTGGGATGGGGTCAGCTTCGAGCTGTGGCAATGGTCCGCTGCCCTTGAAAGCA
ACCAGAAGTCCTGCGTCTTGCTGGTCGAGGCTGGCGGCGAGCGCTTGCTGCTGACCGGCGACATCGATAGCCAGGCTGAG
CGCGCCTTGCTCGACGGGCCGCTGGCCTTGCCCATCCAGTGGCTGGCGGCCCCGCATCATGGCAGCCGCAGCTCCTCGTC
GATGACGTTGTTGTCGCGCCTCAAACCGCATTCGGTGCTGATCTCCCGGGGGCAAGGCAATGCGTTCGGTCATCCCCATC
CCCGGGTGATCGCCCGTTACCGACGGCTGGGCATGGCGATCTACGACAGTGCTGAACAGGGCGCCATTCGTCTGCAACTG
GGCGCCTTCGAGCCGCCATTCACCCAGGCCGGGCAGCGGCGGTATTGGCGGGATCCGCCGTCTGCGGGGCTGCGGACCGA
ACATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.872

95.722

0.592