Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   J9870_RS20995 Genome accession   NZ_CP072913
Coordinates   4877515..4878150 (-) Length   211 a.a.
NCBI ID   WP_210639828.1    Uniprot ID   -
Organism   Pseudomonas sp. Tri1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4872515..4883150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9870_RS20960 - 4872894..4873364 (-) 471 WP_210639822.1 (2Fe-2S)-binding protein -
  J9870_RS20965 murB 4873631..4874650 (-) 1020 WP_210639823.1 UDP-N-acetylmuramate dehydrogenase -
  J9870_RS20970 - 4874647..4875111 (-) 465 WP_210639824.1 low molecular weight protein-tyrosine-phosphatase -
  J9870_RS20975 kdsB 4875111..4875875 (-) 765 WP_210639825.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J9870_RS20980 - 4875872..4876057 (-) 186 WP_003179363.1 Trm112 family protein -
  J9870_RS20985 lpxK 4876080..4877090 (-) 1011 WP_210639826.1 tetraacyldisaccharide 4'-kinase -
  J9870_RS20990 - 4877090..4877518 (-) 429 WP_210639827.1 biopolymer transporter ExbD -
  J9870_RS20995 exbB 4877515..4878150 (-) 636 WP_210639828.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  J9870_RS21000 comA 4878247..4880493 (-) 2247 WP_210639829.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J9870_RS21005 - 4880639..4881154 (+) 516 WP_210639830.1 DUF2062 domain-containing protein -
  J9870_RS21010 - 4881242..4882021 (-) 780 WP_210639831.1 ABC transporter permease -
  J9870_RS21015 - 4882018..4882950 (-) 933 WP_135846488.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22840.97 Da        Isoelectric Point: 8.0840

>NTDB_id=556816 J9870_RS20995 WP_210639828.1 4877515..4878150(-) (exbB) [Pseudomonas sp. Tri1]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=556816 J9870_RS20995 WP_210639828.1 4877515..4878150(-) (exbB) [Pseudomonas sp. Tri1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTGGGGCAGGTGTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGTTCGCCCCTGGGCGAAATCCTCGCCGCGGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAGGAGGCCGCCGCTCGCGTCATCCATGAACTGGAGCGCTATAT
CAACGCCCTGGGCACCATCGCCGCCATGGCCCCGTTGCTGGGCCTGCTGGGGACGGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCACCGGCTCCGGCATGACCACCAACGCCTCGGTATTGGCCGGTGGTATTTCCAAGGCCCTGATCACCACCGCC
GCGGGCCTGATGGTGGGGATCCCTTCGGTATTTTTCCATCGGTTCCTGCAACGGCGCATCGACGAGCTCGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAAGGCGACCGTGACGTGGACCTGGCCGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.714

99.526

0.853