Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   L1A16_RS09210 Genome accession   NZ_CP090885
Coordinates   1798628..1799527 (-) Length   299 a.a.
NCBI ID   WP_000904840.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ND6401     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793628..1804527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A16_RS09190 (L1A16_09190) rsmA 1794382..1795254 (-) 873 WP_001216865.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  L1A16_RS09195 (L1A16_09195) - 1795385..1795693 (-) 309 WP_000333257.1 hypothetical protein -
  L1A16_RS09200 (L1A16_09200) - 1795686..1796327 (-) 642 WP_000565535.1 ABC transporter ATP-binding protein -
  L1A16_RS09205 (L1A16_09205) - 1796329..1798359 (-) 2031 WP_000825246.1 bacteriocin-associated integral membrane family protein -
  L1A16_RS09210 (L1A16_09210) comR 1798628..1799527 (-) 900 WP_000904840.1 helix-turn-helix transcriptional regulator Regulator
  L1A16_RS09215 (L1A16_09215) rnmV 1799599..1800159 (-) 561 WP_000660011.1 ribonuclease M5 -
  L1A16_RS09220 (L1A16_09220) - 1800159..1800932 (-) 774 WP_000575636.1 TatD family hydrolase -
  L1A16_RS09225 (L1A16_09225) - 1801237..1802136 (-) 900 WP_000226474.1 DUF1542 domain-containing protein -
  L1A16_RS09230 (L1A16_09230) rpmH 1802420..1802554 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  L1A16_RS09235 (L1A16_09235) - 1802962..1803915 (+) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35256.06 Da        Isoelectric Point: 4.9734

>NTDB_id=556770 L1A16_RS09210 WP_000904840.1 1798628..1799527(-) (comR) [Streptococcus pneumoniae strain ND6401]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIAHRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTQIENYFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQGY
QKKPLVFMFLWKQALRVERDFSLAESFYQSSKTFAKLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=556770 L1A16_RS09210 WP_000904840.1 1798628..1799527(-) (comR) [Streptococcus pneumoniae strain ND6401]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCACC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTATGATAAGAAAGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAGAAGGTAACTCAAATAGAGAATTACTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGGTTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGTAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

37.801

97.324

0.368
  comR Streptococcus suis 05ZYH33

37.801

97.324

0.368
  comR Streptococcus mutans UA159

37.075

98.328

0.365