NTDB

Overview

Name	recF	Type	Machinery gene
Locus tag	L1A15_RS10255	Genome accession	NZ_CP090884
Coordinates	1987604..1988701 (+)	Length	365 a.a.
NCBI ID	WP_000266660.1	Uniprot ID	Q97N44
Organism	Streptococcus pneumoniae strain MD5403
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1982604..1993701

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1A15_RS10230 (L1A15_10230)	pgsA	1983125..1983670 (-)	546	WP_000712141.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
L1A15_RS10235 (L1A15_10235)	rodZ	1983681..1984502 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
L1A15_RS10240 (L1A15_10240)	-	1984544..1985827 (-)	1284	WP_000170216.1	pitrilysin family protein	-
L1A15_RS10245 (L1A15_10245)	-	1985824..1987074 (-)	1251	WP_000424281.1	pitrilysin family protein	-
L1A15_RS10250 (L1A15_10250)	yaaA	1987233..1987601 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
L1A15_RS10255 (L1A15_10255)	recF	1987604..1988701 (+)	1098	WP_000266660.1	DNA replication/repair protein RecF	Machinery gene
L1A15_RS10260 (L1A15_10260)	guaB	1988752..1990230 (-)	1479	WP_000073423.1	IMP dehydrogenase	-
L1A15_RS10265 (L1A15_10265)	trpS	1990382..1991407 (-)	1026	WP_000165445.1	tryptophan--tRNA ligase	-
L1A15_RS10270 (L1A15_10270)	-	1991613..1993235 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

Download Length: 365 a.a. Molecular weight: 41900.00 Da Isoelectric Point: 9.0596

                                >NTDB_id=556675 L1A15_RS10255 WP_000266660.1 1987604..1988701(+) (recF) [Streptococcus pneumoniae strain MD5403]

MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS

IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR

NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI

ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ

LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

Download Length: 1098 bp

                                >NTDB_id=556675 L1A15_RS10255 WP_000266660.1 1987604..1988701(+) (recF) [Streptococcus pneumoniae strain MD5403]

ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT

CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA

CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC

ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA

TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT

TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA

AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG

TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC

AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT

GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA

TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG

AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG

TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC

AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q97N44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46

Detailed information NTG0556675