Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   J9537_RS08045 Genome accession   NZ_CP072888
Coordinates   1635335..1636378 (-) Length   347 a.a.
NCBI ID   WP_218257349.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain F162_2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1630335..1641378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9537_RS08030 (J9537_08030) - 1632432..1632923 (-) 492 WP_218255586.1 ComE operon protein 2 -
  J9537_RS08035 (J9537_08035) - 1633292..1634476 (-) 1185 WP_218255587.1 MFS transporter -
  J9537_RS08040 (J9537_08040) comEA 1634637..1635242 (-) 606 WP_218255588.1 helix-hairpin-helix domain-containing protein Machinery gene
  J9537_RS08045 (J9537_08045) sepM 1635335..1636378 (-) 1044 WP_218257349.1 SepM family pheromone-processing serine protease Regulator
  J9537_RS08050 (J9537_08050) coaD 1636368..1636862 (-) 495 WP_010744912.1 pantetheine-phosphate adenylyltransferase -
  J9537_RS08055 (J9537_08055) rsmD 1636864..1637418 (-) 555 WP_218255589.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J9537_RS08060 (J9537_08060) - 1637578..1637925 (-) 348 WP_028020682.1 YlbG family protein -
  J9537_RS08065 (J9537_08065) - 1637912..1638337 (-) 426 WP_218255590.1 YlbF family regulator -
  J9537_RS08070 (J9537_08070) - 1638339..1639445 (-) 1107 WP_218255591.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38174.98 Da        Isoelectric Point: 8.5591

>NTDB_id=556642 J9537_RS08045 WP_218257349.1 1635335..1636378(-) (sepM) [Enterococcus raffinosus strain F162_2]
MKNNKLVKRLLLIFLALAVVACVIVPIPYYIEEPGETINLKELITVNDKKDENKGSFSLTSVGIRRATVFTALKAKIEPF
HEIISADELTGGASDDEYMQIQKFNMETSQNFAIEQALKLANKPYKMEYKGVYVLGVEKNSNFAGKISVGDTVTKADGKT
FTSSEDFMKYVKSQKVGQKMKVTYTHDGKTKEATEKLIKLPTDKKPGIGITLTDHTEIDSQDKVKVDAGDIGGPSAGLMF
TLEIYEQLVNKDLRHGEKIAGTGTINSEGEVGRIGGIDKKVASAAADKNKVFFAPDDEITKEMKEAQPGIKSNYEEAKAA
AKKLDTDMKIVPVKTVKDALKYLESMK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=556642 J9537_RS08045 WP_218257349.1 1635335..1636378(-) (sepM) [Enterococcus raffinosus strain F162_2]
GTGAAAAATAATAAACTCGTCAAACGATTATTACTTATATTTTTAGCATTAGCAGTGGTGGCTTGTGTGATTGTACCGAT
TCCTTATTACATCGAGGAGCCAGGAGAGACAATCAATTTAAAAGAGTTGATTACAGTCAATGATAAAAAGGATGAAAACA
AAGGATCTTTTAGCTTAACCTCAGTTGGTATACGTCGAGCAACGGTTTTTACAGCTCTAAAAGCAAAAATTGAACCTTTT
CATGAAATTATTTCTGCTGATGAACTGACTGGCGGTGCTAGTGATGATGAATATATGCAGATTCAAAAATTCAATATGGA
AACGTCTCAAAATTTCGCAATTGAACAAGCTTTAAAATTAGCTAATAAACCTTATAAAATGGAGTACAAAGGGGTCTACG
TACTAGGTGTAGAGAAAAATTCAAATTTTGCTGGAAAAATTAGTGTTGGTGATACGGTTACAAAAGCAGATGGAAAAACA
TTTACCAGCAGCGAAGATTTTATGAAGTACGTAAAATCCCAAAAAGTCGGTCAAAAAATGAAAGTGACCTATACACATGA
TGGCAAAACAAAAGAAGCTACCGAGAAGTTGATTAAATTACCAACAGATAAAAAGCCCGGGATTGGAATTACTTTAACTG
ATCACACGGAGATTGACTCGCAGGATAAAGTGAAGGTGGATGCTGGTGATATCGGTGGACCTTCTGCTGGCTTAATGTTT
ACACTAGAAATTTATGAACAGCTCGTTAACAAGGATCTGCGTCACGGTGAGAAGATCGCTGGGACTGGAACGATTAATTC
TGAAGGAGAAGTCGGAAGAATTGGCGGGATTGATAAGAAGGTCGCTAGTGCAGCGGCGGATAAAAATAAGGTCTTTTTCG
CTCCTGATGATGAGATTACAAAAGAAATGAAGGAAGCACAACCAGGTATTAAATCCAATTATGAAGAAGCCAAAGCAGCA
GCTAAAAAGCTGGATACAGATATGAAGATCGTTCCAGTGAAGACAGTGAAGGATGCTTTAAAGTATTTGGAATCAATGAA
ATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(191-311)

PDZ domain (PDZ_2)

(128-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

49.565

99.424

0.493