Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   L1A12_RS10485 Genome accession   NZ_CP090882
Coordinates   2045872..2046969 (+) Length   365 a.a.
NCBI ID   WP_000266667.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain CH2241     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2040872..2051969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A12_RS10460 (L1A12_10460) pgsA 2041393..2041938 (-) 546 WP_000712132.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L1A12_RS10465 (L1A12_10465) rodZ 2041949..2042770 (-) 822 WP_001227958.1 cytoskeleton protein RodZ -
  L1A12_RS10470 (L1A12_10470) - 2042812..2044095 (-) 1284 WP_000170209.1 pitrilysin family protein -
  L1A12_RS10475 (L1A12_10475) - 2044092..2045342 (-) 1251 WP_000424280.1 pitrilysin family protein -
  L1A12_RS10480 (L1A12_10480) yaaA 2045501..2045869 (+) 369 WP_000455903.1 S4 domain-containing protein YaaA -
  L1A12_RS10485 (L1A12_10485) recF 2045872..2046969 (+) 1098 WP_000266667.1 DNA replication/repair protein RecF Machinery gene
  L1A12_RS10490 (L1A12_10490) guaB 2047020..2048498 (-) 1479 WP_000073428.1 IMP dehydrogenase -
  L1A12_RS10495 (L1A12_10495) trpS 2048650..2049675 (-) 1026 WP_000165444.1 tryptophan--tRNA ligase -
  L1A12_RS10500 (L1A12_10500) - 2049881..2051503 (+) 1623 WP_000958764.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41944.01 Da        Isoelectric Point: 8.6746

>NTDB_id=556438 L1A12_RS10485 WP_000266667.1 2045872..2046969(+) (recF) [Streptococcus pneumoniae strain CH2241]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=556438 L1A12_RS10485 WP_000266667.1 2045872..2046969(+) (recF) [Streptococcus pneumoniae strain CH2241]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAAGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGACTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

99.452

100

0.995
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46