Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   J9319_RS15350 Genome accession   NZ_CP072851
Coordinates   2917255..2917896 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 6ww6     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912255..2922896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9319_RS15315 (J9319_15315) - 2913383..2913814 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  J9319_RS15320 (J9319_15320) - 2913814..2914155 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  J9319_RS15325 (J9319_15325) - 2914148..2915626 (+) 1479 WP_116306135.1 Na+/H+ antiporter subunit D -
  J9319_RS15330 (J9319_15330) - 2915633..2916112 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  J9319_RS15335 (J9319_15335) - 2916112..2916393 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  J9319_RS15340 (J9319_15340) mnhG 2916377..2916751 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  J9319_RS15345 (J9319_15345) - 2916842..2917231 (-) 390 WP_008345855.1 hotdog fold thioesterase -
  J9319_RS15350 (J9319_15350) comA 2917255..2917896 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  J9319_RS15355 (J9319_15355) comP 2917977..2920268 (-) 2292 WP_116306137.1 ATP-binding protein Regulator
  J9319_RS15360 (J9319_15360) comX 2920275..2920463 (-) 189 WP_306160900.1 competence pheromone ComX -
  J9319_RS15365 (J9319_15365) - 2920432..2921355 (-) 924 WP_210552196.1 polyprenyl synthetase family protein -
  J9319_RS15370 (J9319_15370) degQ 2921507..2921647 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  J9319_RS15375 (J9319_15375) - 2922153..2922506 (+) 354 WP_019744042.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=556391 J9319_RS15350 WP_007500477.1 2917255..2917896(-) (comA) [Bacillus altitudinis strain 6ww6]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=556391 J9319_RS15350 WP_007500477.1 2917255..2917896(-) (comA) [Bacillus altitudinis strain 6ww6]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718