Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J9319_RS08175 Genome accession   NZ_CP072851
Coordinates   1578761..1579663 (+) Length   300 a.a.
NCBI ID   WP_041090524.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 6ww6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1573761..1584663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9319_RS08155 (J9319_08155) - 1574427..1576163 (+) 1737 WP_210552432.1 glycosyltransferase -
  J9319_RS08160 (J9319_08160) - 1576160..1576435 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  J9319_RS08165 (J9319_08165) sucC 1576612..1577772 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  J9319_RS08170 (J9319_08170) sucD 1577795..1578697 (+) 903 WP_116306855.1 succinate--CoA ligase subunit alpha -
  J9319_RS08175 (J9319_08175) dprA 1578761..1579663 (+) 903 WP_041090524.1 DNA-processing protein DprA Machinery gene
  J9319_RS08180 (J9319_08180) topA 1579858..1581933 (+) 2076 WP_058213783.1 type I DNA topoisomerase -
  J9319_RS08185 (J9319_08185) trmFO 1582004..1583308 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J9319_RS08190 (J9319_08190) xerC 1583371..1584288 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34059.40 Da        Isoelectric Point: 8.2776

>NTDB_id=556371 J9319_RS08175 WP_041090524.1 1578761..1579663(+) (dprA) [Bacillus altitudinis strain 6ww6]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=556371 J9319_RS08175 WP_041090524.1 1578761..1579663(+) (dprA) [Bacillus altitudinis strain 6ww6]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGCGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCACCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCAATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGCGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38