Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   J9312_RS07960 Genome accession   NZ_CP072845
Coordinates   1501863..1502327 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain XP     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1496863..1507327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS07940 (J9312_07890) kinA 1497330..1499150 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  J9312_RS07945 (J9312_07895) dapX 1499160..1500341 (-) 1182 WP_101172463.1 aminotransferase A -
  J9312_RS07950 (J9312_07900) - 1500543..1500704 (-) 162 WP_003245246.1 hypothetical protein -
  J9312_RS07955 (J9312_07905) cheV 1500908..1501819 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  J9312_RS07960 (J9312_07910) kre 1501863..1502327 (-) 465 WP_003232406.1 YkyB family protein Regulator
  J9312_RS07965 (J9312_07915) ykuC 1502453..1503745 (-) 1293 WP_014479656.1 MFS transporter -
  J9312_RS07970 (J9312_07920) ltdD 1503821..1504315 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  J9312_RS07975 (J9312_07925) ppeE 1504372..1505232 (-) 861 WP_003232400.1 metallophosphoesterase -
  J9312_RS07980 (J9312_07930) fadH 1505375..1506139 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=556192 J9312_RS07960 WP_003232406.1 1501863..1502327(-) (kre) [Bacillus subtilis strain XP]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=556192 J9312_RS07960 WP_003232406.1 1501863..1502327(-) (kre) [Bacillus subtilis strain XP]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1