Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   J9B93_RS16800 Genome accession   NZ_CP072843
Coordinates   3420545..3421234 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain VY03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3415545..3426234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9B93_RS16765 (J9B93_16765) fliW 3415636..3416067 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  J9B93_RS16770 (J9B93_16770) - 3416097..3416666 (-) 570 WP_024085861.1 DUF6470 family protein -
  J9B93_RS16775 (J9B93_16775) flgL 3416757..3417674 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  J9B93_RS16780 (J9B93_16780) flgK 3417686..3419203 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  J9B93_RS16785 (J9B93_16785) - 3419219..3419701 (-) 483 WP_003151394.1 flagellar protein FlgN -
  J9B93_RS16790 (J9B93_16790) flgM 3419716..3419982 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  J9B93_RS16795 (J9B93_16795) - 3420052..3420471 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  J9B93_RS16800 (J9B93_16800) comFC 3420545..3421234 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  J9B93_RS16805 (J9B93_16805) - 3421240..3421524 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  J9B93_RS16810 (J9B93_16810) comFA 3421582..3422967 (-) 1386 WP_044052858.1 DEAD/DEAH box helicase Machinery gene
  J9B93_RS16815 (J9B93_16815) - 3423075..3423923 (-) 849 WP_044052857.1 DegV family protein -
  J9B93_RS16820 (J9B93_16820) degU 3424021..3424710 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J9B93_RS16825 (J9B93_16825) degS 3424787..3425950 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=556131 J9B93_RS16800 WP_196616643.1 3420545..3421234(-) (comFC) [Bacillus velezensis strain VY03]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=556131 J9B93_RS16800 WP_196616643.1 3420545..3421234(-) (comFC) [Bacillus velezensis strain VY03]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAGGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603