Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SMUNUM_RS10320 Genome accession   NZ_AP014571
Coordinates   2081077..2082168 (+) Length   363 a.a.
NCBI ID   WP_002264240.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2076077..2087168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS10295 (SMNUM_1953) pgsA 2076485..2077027 (-) 543 WP_002267084.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SMUNUM_RS10300 (SMNUM_1954) - 2077039..2078016 (-) 978 WP_002267085.1 helix-turn-helix domain-containing protein -
  SMUNUM_RS10305 (SMNUM_1955) - 2078089..2079381 (-) 1293 WP_002262453.1 pitrilysin family protein -
  SMUNUM_RS10310 (SMNUM_1956) - 2079383..2080630 (-) 1248 WP_002279892.1 pitrilysin family protein -
  SMUNUM_RS10315 (SMNUM_1957) yaaA 2080709..2081074 (+) 366 WP_002267087.1 S4 domain-containing protein YaaA -
  SMUNUM_RS10320 (SMNUM_1958) recF 2081077..2082168 (+) 1092 WP_002264240.1 DNA replication/repair protein RecF Machinery gene
  SMUNUM_RS10325 (SMNUM_1959) guaB 2082331..2083812 (-) 1482 WP_002296869.1 IMP dehydrogenase -
  SMUNUM_RS10330 (SMNUM_1960) trpS 2083969..2084991 (-) 1023 WP_002264241.1 tryptophan--tRNA ligase -
  SMUNUM_RS10335 (SMNUM_1961) - 2085424..2087043 (+) 1620 WP_002296870.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 42042.29 Da        Isoelectric Point: 9.8334

>NTDB_id=55607 SMUNUM_RS10320 WP_002264240.1 2081077..2082168(+) (recF) [Streptococcus mutans LP13]
MWIEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKELIQFGQKELNVSGLLNRVNGK
IPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVLFAPEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQR
NAYLKSEKKVDTDFLFVLDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQEHLKISYLSSVKFDHKKNIRDNFLN
LLQKNRQGDIFKKNTSVGPHRDDLAFFINQMNANFGSQGQHRSLILSLKLAEIELIKTVTGDYPILLLDDVMSELDNYRQ
IKLLEGIKDNVQTFITTTSLEHLQQLPKKLKLFTINQGKVLSE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=55607 SMUNUM_RS10320 WP_002264240.1 2081077..2082168(+) (recF) [Streptococcus mutans LP13]
ATGTGGATAGAAAAAATTAATTTAAAACATTATCGCAATTATACAGCCATTGAATCTGAATTTTCCCAAAGTCTTAATGT
TTTTGTGGGACAAAATGCTCAAGGAAAAACCAATTTCCTAGAGGCTATTTATTTTTTATCTTTAACCCGCAGTCATCGAA
CACGATCTGACAAAGAACTTATTCAATTTGGTCAAAAAGAATTAAATGTTTCTGGCCTTCTTAATCGTGTCAATGGCAAA
ATTCCTCTGGAAATCAACTTATCTAATAAAGGCCGAACAACAAAAATAAATTATCTCAAACAACCTAAACTTTCAGACTA
TATTGGAACAATGACTGTTGTTCTCTTTGCTCCAGAAGATCTTCAACTAATAAAAGGCTCCCCAAGTCTCAGAAGAAAGT
TTATTGACATTGATTTAGGACAAATCAAGCCTATTTACTTATCTGATTTATCAAATTATAATCATGTTCTTAAACAACGA
AATGCCTATTTAAAATCAGAGAAGAAGGTTGATACTGATTTTCTTTTCGTTCTAGATGAACAATTGGTAGATTATGGTAG
TAAGGTTATTGAGCATCGCCTTGATTTTATTCAAAATTTAACTAAAGAAGCTGATAAATATCATTTCTCTATTTCAAATC
AACAGGAACATTTAAAAATTTCCTACCTTTCTTCTGTTAAATTTGATCATAAAAAAAATATTCGTGATAACTTTTTAAAC
CTGCTACAAAAAAATCGGCAGGGTGATATTTTCAAAAAGAACACCAGTGTTGGTCCGCACCGCGATGATTTAGCCTTTTT
CATCAATCAAATGAACGCTAACTTTGGTAGTCAAGGACAACATCGCAGCCTTATTTTATCTTTAAAGCTGGCTGAGATTG
AACTTATAAAAACAGTCACTGGGGATTATCCTATTCTCTTGTTAGATGATGTCATGAGTGAACTTGATAATTATAGACAA
ATCAAACTTTTAGAAGGCATCAAAGATAATGTTCAGACCTTTATAACAACAACTAGCCTTGAACATCTTCAACAACTCCC
TAAGAAACTAAAGTTATTTACTATCAACCAAGGAAAAGTGCTATCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

64.722

99.174

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

43.902

100

0.446

Multiple sequence alignment